« Back to Rosa chinensis search


Detailed information on CNT30650282


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 9e-80

BLAST vs NONCODE:
NONPOPT000585, E-value = 2e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Rosa chinensisSetaria viridis35.452.5286.09417forward
CNT30521184Rosa chinensisSetaria italica35.418.1485.85417forward
CNT30641080Rosa chinensisNymphaea colorata28.136.9884.29331forward
CNT30549537Rosa chinensisIpomoea triloba35.8263.3684.83422forward
CNT30515028Rosa chinensisJuglans regia24.734.2884.88291forward
CNT30698521Rosa chinensisQuercus lobata16.2134.0588.48191forward
CNT30372626Rosa chinensisArabidopsis thaliana34.863.9680410forward
CNT30618114Rosa chinensisSesamum indicum19.2750.2283.7227forward
CNT30266729Rosa chinensisChenopodium quinoa61.5456.2583.31725forward
CNT3021108Rosa chinensisCitrullus lanatus24.0217.1983.75283forward
CNT30729048Rosa chinensisCorchorus capsularis26.8348.1789.87316forward
CNT30381458Rosa chinensisManihot esculenta25.7243.1688.45303forward
CNT30402686Rosa chinensisBeta vulgaris18.1735.4986.45214forward
CNT30524807Rosa chinensisPhaseolus vulgaris32.5143.4283.81383forward
CNT30628391Rosa chinensisVigna unguiculata35.3136.2783.65416forward
CNT30194995Rosa chinensisPisum sativum26.9133.386.12317forward
CNT30495282Rosa chinensisOlea europaea34.5523.1184.77407forward
CNT30711739Rosa chinensisGlycine max24.8724.4888.05293forward
CNT30225924Rosa chinensisHordeum vulgare26.455.2483.28311forward
CNT30389985Rosa chinensisTriticum turgidum23.8527.6383.99281forward
CNT30561874Rosa chinensisActinidia chinensis27.9337.388.15329forward
CNT3086110Rosa chinensisVigna radiata25.1326.4884.8296forward
CNT30508528Rosa chinensisSolanum lycopersicum21.4848.7583253forward
CNT30174161Rosa chinensisTrifolium pratense32.5148.5483.81383forward
CNT30144438Rosa chinensisMedicago truncatula27.1665.4485.62320forward
CNT30437887Rosa chinensisAegilops tauschii23.8540.1484.34281forward
CNT30667060Rosa chinensisTriticum dicoccoides26.448.9882.96311forward
CNT30310308Rosa chinensisCamelina sativa14.4373.5982.35170forward
CNT3059692Rosa chinensisArabidopsis lyrata7.5630.886.5289forward
CNT3082721Rosa chinensisBrassica juncea15.5363.3285.79183forward
CNT30471855Rosa chinensisSaccharum spontaneum37.7848.3785.84445forward
CNT3014998Rosa chinensisZea mays21.0544.7781.05248forward
CNT30608385Rosa chinensisGossypium raimondii29.7163.6489.71350forward
CNT30218668Rosa chinensisKalanchoe fedtschenkoi20.8863.5787.4246forward
CNT3066706Rosa chinensisLeersia perrieri17.7461.4781.34209forward
CNT30212612Rosa chinensisHelianthus annuus18.9392.5382.96223forward
CNT30349162Rosa chinensisEragrostis tef15.5320.0987.98183forward
CNT30477100Rosa chinensisArabidopsis halleri20.5461.2779.75242forward
CNT30368076Rosa chinensisSorghum bicolor34.7237.5685.82409forward
CNT30620812Rosa chinensisCajanus cajan27.9326.4980.55329forward
CNT30597062Rosa chinensisOryza meridionalis30.9833.1884.11365forward
CNT30355133Rosa chinensisLactuca sativa16.4722.1781.44194forward
CNT30432398Rosa chinensisPapaver somniferum34.833.7784.15410forward
CNT3055182Rosa chinensisAmborella trichopoda27.530.6581.48324forward
CNT3022568Rosa chinensisPopulus trichocarpa32.9428.0887.89388forward
CNT3035650Rosa chinensisCucumis melo35.3130.8687.26416forward
CNT30331991Rosa chinensisDioscorea rotundata12.2230.4486.11144forward
CNT30148817Rosa chinensisBrachypodium distachyon38.2939.0185.14451forward
CNT30574675Rosa chinensisOryza barthii13.2434.5982.69156forward
CNT30496713Rosa chinensisDigitaria exilis35.427.6985.13417forward
CNT30116702Rosa chinensisOryza nivara26.9130.8782.97317forward
CNT30174424Rosa chinensisVigna angularis34.850.4383.9410forward
CNT30551132Rosa chinensisOryza brachyantha9.0827.7289.72107forward
CNT30113329Rosa chinensisFicus carica18.8520.6186.04222forward
CNT30725315Rosa chinensisLupinus angustifolius35.1441.1583.82414forward

Expression of CNT30650282

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MFVLVHVSQATLLSGSCSRQASSTASEIWSHSLSGCPSFTDSDVNRKVSIF

>peptide 2 (63 aa)
MILRPASTKLGCKDMAKGHQLRGFISGIAKHVTLVTSTNLLWALGKVTMDTLGNIWALLLNVD*

>peptide 3 (38 aa)
MSHRQPCCQDPAQGKHQALRQRSGRTACRGVPRSQIQM*

>peptide 4 (42 aa)
MVIIPGLKSKFSFTILRISLSGIFPVPYVSTKTDKGSGTPMA*

>peptide 5 (36 aa)
MCRRRPTRAQGHQWHRRPARWPCEQDHLLQCSWQPA*

>peptide 6 (31 aa)
MLTRTLQLSASRPTSSETNPMLRHVSRTIFS*

Sequence

>CNT30650282
GTTTCATTGACATAACAAAAATGAAAGGAATCACAGGTTCATGTTTGAAAGCTAATAACTAATAACATAGATAGCTTCAGTGCCATCAATTTGGACAAAA
TTCTGTTCATTACAGAGACACTGGTGGATGAAAATACAGTAATCCATTAAATAAAATAAGAAAAACAAATAATAGAAAAGACCAGCGATAACGTATGAAA
ATTAGAAATTAGACTCTGAGAACACGCATATTATTCATCCCACTTGATGCAAGCACTGAATGACCGGCACGGCACAATCGAACAATCTCAAGACTGAGGC
TTCTCCCACTTGAGGGGCTTCACAACCTCCCAGGTGAAGTCAGGGTCATCCCTTCCGAAGTGCCCATAGGCGGCTGTCTTCAAGAATCTTCCATTGCCAC
CCCTCTTGAGGTCCAGGTTGATGGTCATCATACCCGGCCTGAAGTCAAAGTTCTCCTTCACAATTTTAAGGATCTCCTTGTCAGGGATCTTTCCAGTTCC
GTATGTGTCGACGAAGACCGACAAGGGCTCAGGGACACCAATGGCATAGGAGACCTGCACGATGGCCCTGCGAGCAAGACCATTTGCTACAATGCTCTTG
GCAGCCTGCCTGACAATGTAAGCACCACTCCTGTCCACCTTGGTAGGGTCCTTTCCAGAGAAAGCACCACCACCATGGGCTCCCCAACCACCATAGGTAT
CAATAATGATCTTGCGTCCGGCGAGCACCAAGCTTGGTTGCAAGGACATGGCTAAGGGGCATCAACTCAGGGGTTTCATCAGTGGCATAGCCAAACATGT
GACCCTGGTCACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCATGGACACCCTGGGCAATATCTGGGCTCTGCTGCTCAATGTTGACTAGGAC
CTTGCAGTTATCAGCATCAAGACCGACATCATCAGAAACAAACCCAATGCTGCGGCATGTGTCACGGACAATCTTCTCGTAGTCAACAGTGGCCTTGGTG
GTGATCTCTCCGAACACCATTACCATGTTTGTTTTGGTACATGTCTCACAGGCAACCTTGCTGTCAGGATCCTGCTCAAGGCAAGCATCAAGCACTGCGT
CAGAGATCTGGTCGCACAGCTTGTCGGGGTGTCCCTCGTTCACAGATTCAGATGTGAATAGGAAAGTCTCCATTTTCT