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Detailed information on CNT30373104


BLAST search results

BLAST vs Swiss-Prot:
sp|P23686|METK1_ARATH, E-value = 2e-149

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Arabidopsis thalianaSetaria viridis58.5261.8481.06491forward
CNT30520816Arabidopsis thalianaSetaria italica64.9663.0881.1545forward
CNT30641080Arabidopsis thalianaNymphaea colorata33.2531.1783.87279forward
CNT30515028Arabidopsis thalianaJuglans regia28.4928.1582.43239forward
CNT30618114Arabidopsis thalianaSesamum indicum22.1741.1583.87186forward
CNT30266730Arabidopsis thalianaChenopodium quinoa22.7717.0587.96191forward
CNT3021108Arabidopsis thalianaCitrullus lanatus44.5822.7284.22374forward
CNT30729630Arabidopsis thalianaCorchorus capsularis45.6546.7680.42383forward
CNT30381460Arabidopsis thalianaManihot esculenta59.8354.6280.68502forward
CNT30402638Arabidopsis thalianaBeta vulgaris45.1729.5984.96379forward
CNT30524850Arabidopsis thalianaPhaseolus vulgaris40.2946.8184.32338forward
CNT30628391Arabidopsis thalianaVigna unguiculata65.4447.8681.79549forward
CNT30194995Arabidopsis thalianaPisum sativum25.2722.2787.26212forward
CNT30712616Arabidopsis thalianaGlycine max33.8534.9384.51284forward
CNT3047443Arabidopsis thalianaPrunus dulcis26.2218.4485.91220forward
CNT30638840Arabidopsis thalianaCapsicum annuum27.7727.2886.7233forward
CNT3090332Arabidopsis thalianaSolanum tuberosum30.5139.3885.16256forward
CNT30188757Arabidopsis thalianaSecale cereale30.6358.0184.82257forward
CNT30294498Arabidopsis thalianaTriticum aestivum48.3950.8180.79406forward
CNT30225924Arabidopsis thalianaHordeum vulgare26.9440.1484.96226forward
CNT30389985Arabidopsis thalianaTriticum turgidum58.5248.2880.24491forward
CNT30561874Arabidopsis thalianaActinidia chinensis47.7945.4681.3401forward
CNT30508429Arabidopsis thalianaSolanum lycopersicum10.3735.2290.887forward
CNT30172560Arabidopsis thalianaTrifolium pratense35.2843.4783.45296forward
CNT30144304Arabidopsis thalianaMedicago truncatula43.8657.2386.14368forward
CNT30441436Arabidopsis thalianaAegilops tauschii29.5648.9285.48248forward
CNT3082721Arabidopsis thalianaBrassica juncea15.6145.3386.26131forward
CNT3013982Arabidopsis thalianaZea mays22.4164.8386.17188forward
CNT3066706Arabidopsis thalianaLeersia perrieri15.3837.9483.72129forward
CNT30624603Arabidopsis thalianaDaucus carota33.9743.1883.51285forward
CNT30686785Arabidopsis thalianaTriticum urartu37.6631.2984.81316forward
CNT30367875Arabidopsis thalianaSorghum bicolor22.4122.7384.57188forward
CNT30597069Arabidopsis thalianaOryza meridionalis58.5224.5480.24491forward
CNT30358838Arabidopsis thalianaLactuca sativa42.0751.6181.87353forward
CNT30570759Arabidopsis thalianaVitis vinifera22.4133.4583.51188forward
CNT3055182Arabidopsis thalianaAmborella trichopoda49.2339.0780.63413forward
CNT3022562Arabidopsis thalianaPopulus trichocarpa63.8934.2780.6536forward
CNT3035650Arabidopsis thalianaCucumis melo45.1728.1286.81379forward
CNT30174546Arabidopsis thalianaVigna angularis24.7927.1983.65208forward
CNT30113329Arabidopsis thalianaFicus carica45.6535.5684.33383forward
CNT30725315Arabidopsis thalianaLupinus angustifolius44.9337.4885.68377forward

Expression of CNT30373104

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MMILRPVRPASPWGPPMTNRPEGFKWKMVFSSRYFSGMTGLMTCSLRSRAISSLVTVSSCWVEMRTVWTRIGTMAPLSL*

>peptide 2 (59 aa)
MLLKVTGNFVVGHSFIVLGGDEDCVDTDWDHGTLVIVVLNSDLGFASTELGGKNMAQGH*

Sequence

>CNT30373104
CTCCAAGCCGTGTAAAAGTCGCCATAAAAACAAACACCCAATTGAAATAGCTCAAGTACAATGATACATAAACACAATAAACCACAAAAACAGAGAAATA
AAAAAGTGAGCAGATAATTGGTTTGTGGAATGAAGACAGAAACAGAGTAGGTCAAGGTTAATTGTCATCATTCCTGGTCTGAAGTCGAAGCTCTCCTTCA
CAATCTTTAGTATCTCCTTGTCTGGAATCAATCCAGTCTCATAAGTGTCCACAAAGACAGACAATGGCTCAGGGACTCCAATGGCGTATGAGACCTGAAC
AAGAGCCCTACGAGCCATCCCGTTAGCCACAACGCTCTTAGCTGCTTGTCTCACAATGTAGGCTCCGCTTCTGTCGACCTTGGTTGGGTCTTTACCTGAG
AATGCACCGCCTCCGTGAGCTCCCCATCCACCGTAAGTGTCGATGATGATCTTACGCCCGGTGAGACCAGCGTCTCCATGGGGTCCACCGATGACGAATC
GGCCTGAAGGGTTCAAGTGGAAGATGGTTTTCTCGTCTAGGTACTTCTCTGGGATGACTGGCTTGATGACATGCTCCTTAAGGTCACGGGCAATTTCGTC
GTTGGTCACAGTTTCATCGTGTTGGGTGGAGATGAGGACTGTGTGGACACGGATTGGGACCATGGCACCCTTGTCATTGTAGTACTCAACAGTGACTTGG
GTTTTGCGAGCACCGAGCTTGGTGGCAAGAACATGGCTCAGGGGCATTAACTCAGGGGTTTCATCAGTGGCATAACCAAACATGTGCCCTTGGTCACCGG
CTCCAATTTCTTCAGGACATTTGGTGAAGTGACCGTGAA