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Detailed information on CNT30437887


BLAST search results

BLAST vs Swiss-Prot:
sp|A6XMY9|METK1_TRIMO, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Aegilops tauschiiSetaria viridis54.4347.9887.66381forward
CNT30520816Aegilops tauschiiSetaria italica54.4344.187.4381forward
CNT30639623Aegilops tauschiiNymphaea colorata28.5738.3986.5200forward
CNT30549537Aegilops tauschiiIpomoea triloba44.4346.782.64311forward
CNT30698521Aegilops tauschiiQuercus lobata38.4347.9582.9269forward
CNT30618114Aegilops tauschiiSesamum indicum30.7147.5781.86215forward
CNT30266729Aegilops tauschiiChenopodium quinoa4423.8986.36308forward
CNT3021108Aegilops tauschiiCitrullus lanatus40.5717.2586.27284forward
CNT30729630Aegilops tauschiiCorchorus capsularis5345.382.21371forward
CNT30381460Aegilops tauschiiManihot esculenta57.5743.8582.38403forward
CNT30402638Aegilops tauschiiBeta vulgaris47.1425.7685.76330forward
CNT30524850Aegilops tauschiiPhaseolus vulgaris27.1426.3284.21190forward
CNT30628634Aegilops tauschiiVigna unguiculata30.7129.8685.12215forward
CNT30194995Aegilops tauschiiPisum sativum28.5721.0183.5200forward
CNT30490001Aegilops tauschiiOlea europaea16.1422.7884.96113forward
CNT30708643Aegilops tauschiiGlycine max3847.9379.32266forward
CNT3047442Aegilops tauschiiPrunus dulcis34.4339.7782.99241forward
CNT30158121Aegilops tauschiiPistacia vera24.7127.6887.86173forward
CNT30181754Aegilops tauschiiSecale cereale42.7147.5497.66299forward
CNT30294498Aegilops tauschiiTriticum aestivum54.7147.93100383forward
CNT30389985Aegilops tauschiiTriticum turgidum98.2967.6598.98688forward
CNT30561874Aegilops tauschiiActinidia chinensis53.4342.483.42374forward
CNT30508545Aegilops tauschiiSolanum lycopersicum19.5733.0983.94137forward
CNT30471290Aegilops tauschiiSaccharum spontaneum54.4342.4387.66381forward
CNT30608385Aegilops tauschiiGossypium raimondii48.2961.4583.43338forward
CNT30218287Aegilops tauschiiKalanchoe fedtschenkoi43.1458.1983.11302forward
CNT3066706Aegilops tauschiiLeersia perrieri29.4360.5984.47206forward
CNT30650282Aegilops tauschiiRosa chinensis40.1423.8584.34281forward
CNT30681758Aegilops tauschiiTriticum urartu46.2947.5199.69324forward
CNT30349162Aegilops tauschiiEragrostis tef39.8630.6386.38279forward
CNT30477100Aegilops tauschiiArabidopsis halleri20.2935.9584.51142forward
CNT30368062Aegilops tauschiiSorghum bicolor51.7132.9487.57362forward
CNT30620815Aegilops tauschiiCajanus cajan2422.9883.93168forward
CNT30597069Aegilops tauschiiOryza meridionalis53.2918.6485.52373forward
CNT30358838Aegilops tauschiiLactuca sativa23.8624.4282.04167forward
CNT30420528Aegilops tauschiiPapaver somniferum27.7110.1884.02194forward
CNT30571189Aegilops tauschiiVitis vinifera25.1428.5788.64176forward
CNT3055182Aegilops tauschiiAmborella trichopoda53.4335.3879.95374forward
CNT3025891Aegilops tauschiiPopulus trichocarpa54.4348.9184.25381forward
CNT30331991Aegilops tauschiiDioscorea rotundata29.1443.1382.35204forward
CNT30101941Aegilops tauschiiOryza rufipogon44.4337.2586.5311forward
CNT30496713Aegilops tauschiiDigitaria exilis44.4320.6587.46311forward
CNT30725315Aegilops tauschiiLupinus angustifolius53.8637.4885.68377forward

Expression of CNT30437887

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPIQRVHGDVETLLPSKEKEFNYPRYNHQRQQQE*

>peptide 2 (46 aa)
MIRLLHTHLSSRGLVKLEGLHNLPGLKSKFSFTILRISLSGILPVP*

>peptide 3 (85 aa)
SWTTDRGNRTSTAVSVDSKSKKKAQKTSKDPTSINSAHIFVFHTKIPITRCQFSVSTAMLKPCFLLKRRNSIIQDTTTSGSSRND*

Sequence

>CNT30437887
AGCTGGACGACCGATAGAGGAAACCGCACAAGTACTGCGGTTTCAGTAGACTCAAAAAGCAAAAAGAAAGCACAGAAGACATCAAAAGACCCGACTAGTA
TTAACTCAGCACATATTTTTGTATTCCATACCAAAATACCAATCACTAGATGCCAATTCAGCGTGTCCACGGCGATGTTGAAACCCTGCTTCCTTCTAAA
GAGAAGGAATTCAATTATCCAAGATACAACCACCAGCGGCAGCAGCAGGAATGATTAGACTCCTTCATACCCACCTCTCAAGCAGAGGCCTTGTCAAACT
TGAGGGGCTTCACAACCTCCCAGGCCTGAAGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTATCGGGGATCTTGCCAGTACCATAAGAGTCAACG
AAGACAGATAAGGGCTCAGGCACACCAATGGCGTAGGAGATCTGAACAATGCAGCGGCGTGCAAGACCGCTAGCAATGATGCTCTTGGCAGCCTGCCTGG
CAATGTAGGCGCCACTGCGGTCAACCTTAGTTGGGTCCTTGCCAGAGAAAGCACCACCTCCGTGTGCTCCCCAGCCACCATAGGTGTCGATGATGATCTT
GCGACCAGTAAGACCAGCATCACCATGAGGGCCACCAATGACAAAGCGGCCTGATGGATTCAAGTGGAATATGGTCTTCTCGTCCAGGTACTTCTCAGGG