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Detailed information on CNT30225924


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB23|METK2_HORVU, E-value = 3e-93

BLAST vs NONCODE:
NONPOPT000587, E-value = 4e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Hordeum vulgareSetaria viridis78.8655.9285.14444forward
CNT30522677Hordeum vulgareSetaria italica60.3938.3388.53340forward
CNT30549537Hordeum vulgareIpomoea triloba59.155081.68333forward
CNT30698521Hordeum vulgareQuercus lobata45.4745.6383.2256forward
CNT30373104Hordeum vulgareArabidopsis thaliana40.1426.9484.96226forward
CNT30266729Hordeum vulgareChenopodium quinoa56.3124.5983.91317forward
CNT3021108Hordeum vulgareCitrullus lanatus56.4819.3285.53318forward
CNT30729630Hordeum vulgareCorchorus capsularis43.5229.9186.12245forward
CNT30381460Hordeum vulgareManihot esculenta71.443.7481.34402forward
CNT30402638Hordeum vulgareBeta vulgaris63.2327.7984.27356forward
CNT30524850Hordeum vulgarePhaseolus vulgaris38.5430.0683.41217forward
CNT30628391Hordeum vulgareVigna unguiculata76.9137.7580.6433forward
CNT30194995Hordeum vulgarePisum sativum34.2820.2783.42193forward
CNT30712616Hordeum vulgareGlycine max27.5319.0784.52155forward
CNT30158121Hordeum vulgarePistacia vera31.7928.6487.15179forward
CNT30188823Hordeum vulgareSecale cereale44.429.4897.6250forward
CNT30303722Hordeum vulgareTriticum aestivum53.825097.69303forward
CNT30389985Hordeum vulgareTriticum turgidum73.3640.6188.14413forward
CNT30561874Hordeum vulgareActinidia chinensis91.8358.6281.82517forward
CNT30172560Hordeum vulgareTrifolium pratense31.6226.1484.83178forward
CNT30144304Hordeum vulgareMedicago truncatula32.3328.385.71182forward
CNT30667060Hordeum vulgareTriticum dicoccoides70.1662.294.43395forward
CNT30471290Hordeum vulgareSaccharum spontaneum78.154985.91440forward
CNT30608385Hordeum vulgareGossypium raimondii69.0970.7381.75389forward
CNT30218287Hordeum vulgareKalanchoe fedtschenkoi53.1157.6182.61299forward
CNT3066706Hordeum vulgareLeersia perrieri37.1261.4784.69209forward
CNT30650282Hordeum vulgareRosa chinensis55.2426.483.28311forward
CNT30624603Hordeum vulgareDaucus carota42.135.9182.7237forward
CNT30686069Hordeum vulgareTriticum urartu77.095196.77434forward
CNT30349162Hordeum vulgareEragrostis tef44.0527.2287.1248forward
CNT30363315Hordeum vulgareSorghum bicolor60.3940.9687.35340forward
CNT30620815Hordeum vulgareCajanus cajan29.1322.4482.93164forward
CNT30597069Hordeum vulgareOryza meridionalis75.4921.2484.47425forward
CNT30358838Hordeum vulgareLactuca sativa44.5836.779.68251forward
CNT30420528Hordeum vulgarePapaver somniferum42.8112.6483.4241forward
CNT30571189Hordeum vulgareVitis vinifera30.227.688.82170forward
CNT3055182Hordeum vulgareAmborella trichopoda44.2323.5684.74249forward
CNT3025891Hordeum vulgarePopulus trichocarpa65.947.6383.02371forward
CNT3035650Hordeum vulgareCucumis melo56.4823.5984.59318forward
CNT30101941Hordeum vulgareOryza rufipogon61.141.284.59344forward
CNT30574675Hordeum vulgareOryza barthii28.9536.1487.12163forward
CNT30496713Hordeum vulgareDigitaria exilis61.122.8485.76344forward
CNT30113329Hordeum vulgareFicus carica27.1814.2190.85153forward
CNT30725315Hordeum vulgareLupinus angustifolius7340.8581.27411forward

Expression of CNT30225924

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLLEASSKLGGEHVAEGHQLRGLVGGVPEHDALVTSTD

>peptide 2 (55 aa)
DEPLSTFLQVQVNADHPGPEVKVLLHELEDLPVGDLAGAVGVDEHRQRLRYTDGI*

>peptide 3 (39 aa)
MNLFPPFFKSRLMLIIPGLKSKFSFTSLRISLSGILPVP*

>peptide 4 (64 aa)
MTKRPDGFRWKMVFSSRYFAGITGLMTCSLRRAPSLVASTWLRGISSGVSSVAYPNMMPWSPAPT

Sequence

>CNT30225924
GATGAACCTCTTTCCACCTTTCTTCAAGTCCAGGTTAATGCTGATCATCCCGGGCCTGAAGTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCCTGTCG
GGGATCTTGCCGGTGCCGTAGGAGTCGACGAACACAGACAAAGGCTCAGGTACACCGATGGCATATGAGATCTGCACAATGCACCGGCGTGCGAGGCCGC
TGGCGATGATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGGTCGACCTTGGTAGGGTCCTTGCCAGAGAAGGCACCGCCGCCGTGGGCTCC
CCAGCCACCATAGGTGTCGATGATGATCTTGCGGCCGGTGAGACCGGCATCGCCGTGAGGGCCACCGATGACAAAGCGGCCCGATGGGTTCAGGTGGAAG
ATGGTGTTCTCATCGAGGTACTTTGCGGGGATCACTGGCTTGATGACATGCTCCTTGAGGCGAGCTCCAAGCTTGGTGGCGAGCACGTGGCTGAGGGGCA
TCAGCTCAGGGGTCTCGTCGGTGGCGTACCCGAACATGATGCCCTGGTCACCAGCACCGACCT