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Detailed information on CNT30368062


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 1e-87

BLAST vs NONCODE:
NONATHT001922, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672658Sorghum bicolorSetaria viridis57.3267.7492.54630forward
CNT30521359Sorghum bicolorSetaria italica59.7899.792.09657forward
CNT30698521Sorghum bicolorQuercus lobata18.3836.0186.14202forward
CNT30618114Sorghum bicolorSesamum indicum20.6650.2281.94227forward
CNT3021108Sorghum bicolorCitrullus lanatus24.7516.5285.66272forward
CNT30729630Sorghum bicolorCorchorus capsularis34.0345.6781.55374forward
CNT30381460Sorghum bicolorManihot esculenta33.4840.0485.33368forward
CNT30402638Sorghum bicolorBeta vulgaris26.9323.1188.51296forward
CNT30524850Sorghum bicolorPhaseolus vulgaris16.4725.0786.74181forward
CNT30628391Sorghum bicolorVigna unguiculata36.1234.6181.86397forward
CNT30158121Sorghum bicolorPistacia vera14.9226.2490.85164forward
CNT30294498Sorghum bicolorTriticum aestivum34.5847.5687.63380forward
CNT30389985Sorghum bicolorTriticum turgidum32.9435.5987.85362forward
CNT30561874Sorghum bicolorActinidia chinensis34.1242.5285.07375forward
CNT30508545Sorghum bicolorSolanum lycopersicum10.5628.0286.21116forward
CNT30144304Sorghum bicolorMedicago truncatula19.4733.2883.18214forward
CNT30437887Sorghum bicolorAegilops tauschii32.9451.7187.57362forward
CNT3082721Sorghum bicolorBrassica juncea15.8360.2186.78174forward
CNT3014998Sorghum bicolorZea mays24.6648.9291.51271forward
CNT30608385Sorghum bicolorGossypium raimondii35.2170.3685.01387forward
CNT30218287Sorghum bicolorKalanchoe fedtschenkoi27.4858.1983.77302forward
CNT3066706Sorghum bicolorLeersia perrieri19.0261.4785.65209forward
CNT30349160Sorghum bicolorEragrostis tef26.3931.2891.72290forward
CNT30477100Sorghum bicolorArabidopsis halleri12.7435.4485140forward
CNT30620815Sorghum bicolorCajanus cajan14.121.285.81155forward
CNT30597069Sorghum bicolorOryza meridionalis44.2224.2991.15486forward
CNT30358838Sorghum bicolorLactuca sativa14.9223.9884.15164forward
CNT30420022Sorghum bicolorPapaver somniferum19.5623.4286.51215forward
CNT30571189Sorghum bicolorVitis vinifera14.9226.6291.46164forward
CNT3055182Sorghum bicolorAmborella trichopoda36.1237.5680.6397forward
CNT3025891Sorghum bicolorPopulus trichocarpa33.4847.2484.51368forward
CNT30331991Sorghum bicolorDioscorea rotundata21.0248.8484.85231forward
CNT30551132Sorghum bicolorOryza brachyantha17.7450.5292.82195forward
CNT30113343Sorghum bicolorFicus carica12.9240.1190.85142forward
CNT30725315Sorghum bicolorLupinus angustifolius34.1237.2884.27375forward

Expression of CNT30368062

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MFTSTLQWSASSPTSADTKPMLRQVSQATLLSGSSARQASRTASETWSQSLSGCPSFTDSEVKRKVSTAAIFSDLQ

>peptide 2 (62 aa)
MAEGHQLRGLISGIPKHVSLVTSSNLLGALGEVAVHTLSNIRRLLLNVHKHLAVVSVKPDIS*

>peptide 3 (59 aa)
MTKRPDGLRWKMVFSSSLVARTWLRGISSGVSSVAYPNMCPWSPAPISSGRLVKWPCTP*

>peptide 4 (42 aa)
MMIMPGLKSKFSFTILRISLSGIVPVPYVSTKTERGSGTPMA*

Sequence

>CNT30368062
AGCCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAACCAGTAAAACCAGAAATAATCCTCTAGGTAAATAAGCAGACACAATAAGACCCTCACAAGTA
CCACTTATTAGGACAGTACAAGTACAAATGATAAGCAAGGGGCAGATCAAGAATCACAACATATAGAAGCCAGATAAAACATGATAAAGCGCAGCAGACC
AAAAGCTTCTTCTGAAAAAGTGAGGGTGCCTTAGGCAGAAGGCTTCTCCGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCA
AAGTGGCCGTAGGCCGCCGTCTTGAGGTCGAGGTTGATGATGATCATGCCAGGCCTGAAGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAG
GAATCGTGCCGGTGCCATACGTGTCAACAAAGACGGAGAGAGGCTCAGGCACACCGATGGCGTAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCGTT
GGCAACAATGCTCTTGGCAGCCTGCCTTGCGATGTAGGCTCCACTGCGGTCGACCTTGGTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCC
CAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTAAGACCAGCATCACCGTGAGGTCCACCAATGACAAAGCGACCAGATGGGTTAAGGTGGAAGA
TGGTCTTCTCATCAAGCTTGGTGGCAAGGACATGGCTGAGGGGCATCAGCTCAGGGGTCTCATCAGTGGCATACCCAAACATGTGTCCCTGGTCACCAGC
TCCAATCTCCTCGGGGCGCTTGGTGAAGTGGCCGTGCACACCCTGAGCAATATCAGGAGACTGCTGCTCAATGTTCACAAGCACCTTGCAGTGGTCAGCG
TCAAGCCCGACATCAGCTGACACGAAACCAATGTTGCGGCAGGTCTCGCAAGCAACCTTGCTGTCAGGGTCCTCAGCAAGGCAAGCGTCAAGAACAGCAT
CTGAGACCTGGTCGCAGAGCTTGTCTGGGTGTCCCTCATTCACAGACTCCGAGGTGAAGAGGAAGGTGTCGACTGCGGCCATCTTCTCTGATCTGCAGC