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Detailed information on CNT3022562


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 5e-167

BLAST vs NONCODE:
NONPOPT000587, E-value = 3e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Populus trichocarpaSetaria viridis31.1461.3484.19487forward
CNT30520816Populus trichocarpaSetaria italica34.462.2783.83538forward
CNT30515028Populus trichocarpaJuglans regia24.8745.8284.58389forward
CNT30373104Populus trichocarpaArabidopsis thaliana34.2763.8980.6536forward
CNT30266631Populus trichocarpaChenopodium quinoa12.6622.686.87198forward
CNT3021108Populus trichocarpaCitrullus lanatus29.828.3183.69466forward
CNT30729630Populus trichocarpaCorchorus capsularis25.8349.3385.4404forward
CNT30381460Populus trichocarpaManihot esculenta42.4672.2589.46664forward
CNT30402638Populus trichocarpaBeta vulgaris43.0952.6283.83674forward
CNT30628634Populus trichocarpaVigna unguiculata43.6794.8683.02683forward
CNT30712616Populus trichocarpaGlycine max24.0446.2585.64376forward
CNT3047443Populus trichocarpaPrunus dulcis23.1530.3485.64362forward
CNT30638840Populus trichocarpaCapsicum annuum15.1527.7586.5237forward
CNT30188757Populus trichocarpaSecale cereale27.7597.9781.8434forward
CNT30389985Populus trichocarpaTriticum turgidum31.7848.8783.7497forward
CNT30561874Populus trichocarpaActinidia chinensis26.4146.8386.92413forward
CNT30508545Populus trichocarpaSolanum lycopersicum11.2542.5184.66176forward
CNT30172560Populus trichocarpaTrifolium pratense19.3144.3585.43302forward
CNT30146819Populus trichocarpaMedicago truncatula25.0652.284.44392forward
CNT30471290Populus trichocarpaSaccharum spontaneum31.254.3483.61488forward
CNT30608385Populus trichocarpaGossypium raimondii23.6667.2788.65370forward
CNT30626924Populus trichocarpaDaucus carota22.2527.683.62348forward
CNT30686785Populus trichocarpaTriticum urartu32.9951.0981.01516forward
CNT30349162Populus trichocarpaEragrostis tef25.8344.3585.15404forward
CNT30597069Populus trichocarpaOryza meridionalis30.7524.0483.78481forward
CNT30358838Populus trichocarpaLactuca sativa17.5840.281.82275forward
CNT30429132Populus trichocarpaPapaver somniferum36.3835.8880.67569forward
CNT3055164Populus trichocarpaAmborella trichopoda26.473682.13414forward
CNT3035650Populus trichocarpaCucumis melo29.834.5783.69466forward
CNT30331991Populus trichocarpaDioscorea rotundata12.8542.4985.07201forward
CNT30101941Populus trichocarpaOryza rufipogon20.9739.2882.93328forward
CNT30725315Populus trichocarpaLupinus angustifolius38.8760.4484.7608forward

Expression of CNT3022562

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHEIRPLRIANDYRPAARQTELFISTNKISIAQKG*

>peptide 2 (33 aa)
MLSRDENSVDTNRDHCTIVIEVLNSNLSLAIRS*

>peptide 3 (29 aa)
FFFFFFLLSNNLFRPKNTLLHFAAVLMQT*

>peptide 4 (66 aa)
MGSPATIGVNNDLASSETCITMRTTNNKTARWVDGHHSRPKVKALLHNLKDLLVRNFSSAIGVHKD*

>peptide 5 (41 aa)
MAQRHILGGLISGITKHMALVTSTNLLWALGKVTVDTLGNIR

>peptide 6 (55 aa)
MGSPATIGVNNDLASSETCITMRTTNNKTARWVEVKDSFLIKVLLRDNRLDDILL*

Sequence

>CNT3022562
GTTTTTTTTTTTTTTTTTTCTCTTGAGCAATAATTTGTTTCGTCCAAAGAACACATTACTACATTTTGCTGCTGTTCTAATGCAAACTTAACAGGCATTT
GTTACTTCCAGTGCCCTCAATTCAAACAAAATTTCACACATTTTCACACCAGCACTGGGAACAAAATGCGAAGGATAAGAAAAACCAAAGGAAAAAAAAA
AAAAAGAAATGAAAATGAATAGGGTATCTTAATGCATGAGATTAGACCATTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTC
ATAAGTACCAATAAAATAAGCATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGCTTCTCCCATTTGAGGGGCTTGACAACTTCCCAGGTG
AAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCAGCTGTCTTCAAGAACCTATTACCCCCCCTCTTGAGATCCAGGCCTAAAGTCAAAGCTCTCCTTC
ACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGTGTCCACAAAGACTGACAAAGGCTCAGGTACACCAATAGCATAGGAAACTTGCA
CAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCTTGCCTAACAATGTAAGCACCACTCCTATCCACCTTAGTTGGGTCCTTCCCTGA
GAAAGCACCACCACCATGGGCTCCCCAGCCACCATAGGTGTCAATAATGATCTTGCGTCCAGTGAGACCTGCATCACCATGAGGACCACCAATAACAAAA
CGGCCAGATGGGTTGATGGTCATCATTCCAGGCCTAAAGTCAAAGCTCTCCTTCACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGG
TGTCCACAAAGACTGACAAAGGCTCAGGTACACCAATAGCATAGGAAACTTGCACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGC
TTGCCTAACAATGTAAGCACCACTCCTATCCACCTTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCATAGGTGTCAATA
ATGATCTTGCGTCCAGTGAGACCTGCATCACCATGAGGACCACCAATAACAAAACGGCCAGATGGGTTGAGGTGAAAGATAGTTTTCTCATCAAGGTACT
TCTCCGGGATAACAGGCTTGATGACATACTCCTTTAGATCAGCGGCAATTTCATCATTTGTGACAGTCTCATCATGCTGAGTAGAGATGAGAACAGTGTG
GACACGAACAGGGACCATTGCACCATTGTCATTGAAGTACTCAACAGTAACTTGAGTCTTGCCATCAGGTCTTAACCAAGGGCAGGTTCCATTCTTCCTA
ACCTCGGTGAGGCGAGCACCAAGCTTGGTGGCAAGAACATGGCTCAAAGGCATATACTCGGGGGTCTCATCAGTGGCATAACCAAACATATGGCCCTGGT
CACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCCGG