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Detailed information on CNT30624603


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FPL6|METK2_SUASA, E-value = 7e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Daucus carotaSetaria viridis45.1538.4586.58298forward
CNT30520816Daucus carotaSetaria italica46.6735.6586.36308forward
CNT30641080Daucus carotaNymphaea colorata36.6727.0485.95242forward
CNT30549907Daucus carotaIpomoea triloba23.0328.3187.5152forward
CNT30373104Daucus carotaArabidopsis thaliana43.1833.9783.51285forward
CNT30618114Daucus carotaSesamum indicum20.329.6584.33134forward
CNT30266655Daucus carotaChenopodium quinoa42.4224.9185.71280forward
CNT3021108Daucus carotaCitrullus lanatus46.3618.5986.6306forward
CNT30729630Daucus carotaCorchorus capsularis35.328.4584.98233forward
CNT30381493Daucus carotaManihot esculenta46.3640.8585.62306forward
CNT30524807Daucus carotaPhaseolus vulgaris44.0932.9984.54291forward
CNT30628391Daucus carotaVigna unguiculata46.3626.6884.97306forward
CNT30194995Daucus carotaPisum sativum20.7614.3986.86137forward
CNT30495282Daucus carotaOlea europaea33.0312.3883.94218forward
CNT30712616Daucus carotaGlycine max37.5830.584.68248forward
CNT30158121Daucus carotaPistacia vera51.3654.2483.78339forward
CNT30638840Daucus carotaCapsicum annuum31.6724.4786.12209forward
CNT3090332Daucus carotaSolanum tuberosum42.2742.9285.66279forward
CNT30181754Daucus carotaSecale cereale50.4552.9482.88333forward
CNT30292894Daucus carotaTriticum aestivum36.0641.5486.13238forward
CNT30225924Daucus carotaHordeum vulgare35.9142.182.7237forward
CNT30389985Daucus carotaTriticum turgidum46.2129.9986.23305forward
CNT30561874Daucus carotaActinidia chinensis36.2127.187.45239forward
CNT30508545Daucus carotaSolanum lycopersicum15.7625.1287.5104forward
CNT30172560Daucus carotaTrifolium pratense37.5836.4283.87248forward
CNT30146819Daucus carotaMedicago truncatula43.9438.6284.14290forward
CNT30441436Daucus carotaAegilops tauschii37.5848.9285.89248forward
CNT30662024Daucus carotaTriticum dicoccoides39.751.5783.21262forward
CNT3082721Daucus carotaBrassica juncea26.2159.8685.55173forward
CNT30471290Daucus carotaSaccharum spontaneum40.4529.7386.89267forward
CNT30608385Daucus carotaGossypium raimondii27.8833.4587.5184forward
CNT30218287Daucus carotaKalanchoe fedtschenkoi19.3924.6686.72128forward
CNT3066706Daucus carotaLeersia perrieri20.1539.1285.71133forward
CNT30650534Daucus carotaRosa chinensis51.5236.4887.35340forward
CNT30212612Daucus carotaHelianthus annuus21.8259.7586.11144forward
CNT30686785Daucus carotaTriticum urartu46.2130.283.93305forward
CNT30349162Daucus carotaEragrostis tef41.6730.1986.55275forward
CNT30368076Daucus carotaSorghum bicolor39.724.0683.97262forward
CNT30597069Daucus carotaOryza meridionalis42.5814.0485.41281forward
CNT30358838Daucus carotaLactuca sativa38.0336.780.88251forward
CNT30421092Daucus carotaPapaver somniferum40.339.8283.08266forward
CNT30571189Daucus carotaVitis vinifera51.5255.1985.88340forward
CNT3022365Daucus carotaPopulus trichocarpa5064.9687.27330forward
CNT3035650Daucus carotaCucumis melo45.4522.2686300forward
CNT30331991Daucus carotaDioscorea rotundata15.321.3585.15101forward
CNT30148817Daucus carotaBrachypodium distachyon43.0324.5783.45284forward
CNT30101810Daucus carotaOryza rufipogon45.4511.8383.67300forward
CNT30116702Daucus carotaOryza nivara21.8214.0284.03144forward
CNT30113329Daucus carotaFicus carica33.6420.6186.04222forward
CNT30725315Daucus carotaLupinus angustifolius46.6730.6284.42308forward

Expression of CNT30624603

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LPDNICTTSVHLCGVLSGESTTTVSSPATISVDNDLATC*

>peptide 2 (40 aa)
MVFSSRYFSGMTGLITCSLRSAAISSLVTVSSCWVEMRTV*

>peptide 3 (31 aa)
MLTRTLQLSASRPTSAETNPMLRHVSRTIFS*

>peptide 4 (31 aa)
MLFEVSSNLIVGNSLVVLGGNEDSVNTGTQQ*

>peptide 5 (82 aa)
MAQRHKLRGLVSGIAKHMALVTCANILRALSKMTMDTLGNIRALLLNVNKNLAVVSIKTNISRNKSNVTACLANNLLVVHISL

Sequence

>CNT30624603
CTTGCCTGACAATATATGCACCACTTCTGTCCACCTTTGTGGGGTCCTTTCCGGAGAAAGCACCACCACCGTGAGCTCCCCAGCCACCATAAGTGTCGAT
AATGATCTTGCGACCTGTTAGACCAGCATCACCATGGGGGCCTCCAATTACAAAGCGGCCTGAAGGGTTGAGGTGAAAGATGGTCTTCTCATCAAGATAC
TTCTCTGGGATGACGGGCTTGATTACATGCTCTTTGAGGTCAGCAGCAATCTCATCGTTGGTAACAGTCTCGTCGTGCTGGGTGGAAATGAGGACAGTGT
GAACACGGGTACTCAACAGTGACCTGGGTCTTGCCATCAGGTCTCAACCACGCGCATGTACCATTCTTGCGGACATCAGTAAGGCGAGCGCCAAGTTTGG
TTGCAAGAACATGGCTCAGAGGCATAAGCTCAGGGGTCTCGTCAGTGGCATAGCCAAACATATGGCCCTGGTCACCTGCGCCAATATCCTCCGGGCGCTT
AGTAAGATGACCATGGACACCCTGGGCAATATCAGGGCTCTGTTGCTCAATGTTAACAAGAACCTTGCAGTTGTCAGCATCAAGACCAACATCAGCAGAA
ACAAATCCAATGTTACGGCATGTCTCGCGAACAATCTTCTCGTAGTCCACATCAGCCTTG