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Detailed information on CNT30662024


BLAST search results

BLAST vs Swiss-Prot:
sp|A6XMY9|METK1_TRIMO, E-value = 3e-87

BLAST vs NONCODE:
NONPOPT000587, E-value = 5e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Triticum dicoccoidesSetaria viridis66.5434.784.32338forward
CNT30521128Triticum dicoccoidesSetaria italica69.0947.9584.62351forward
CNT30515028Triticum dicoccoidesJuglans regia61.8136.9882.17314forward
CNT30374815Triticum dicoccoidesArabidopsis thaliana65.9481.1180335forward
CNT30266655Triticum dicoccoidesChenopodium quinoa34.2515.4886.21174forward
CNT30381524Triticum dicoccoidesManihot esculenta53.5432.8981.25272forward
CNT30402638Triticum dicoccoidesBeta vulgaris74.0229.3583.51376forward
CNT30524807Triticum dicoccoidesPhaseolus vulgaris21.6512.4785.45110forward
CNT30628634Triticum dicoccoidesVigna unguiculata73.0351.5381.13371forward
CNT30495282Triticum dicoccoidesOlea europaea21.066.0885.05107forward
CNT30712108Triticum dicoccoidesGlycine max62.676.2681.45318forward
CNT3047443Triticum dicoccoidesPrunus dulcis62.826.7484.33319forward
CNT30158121Triticum dicoccoidesPistacia vera63.985282.77325forward
CNT3090332Triticum dicoccoidesSolanum tuberosum30.712485.9156forward
CNT30181754Triticum dicoccoidesSecale cereale50.3940.797.66256forward
CNT30294498Triticum dicoccoidesTriticum aestivum50.9832.42100259forward
CNT30389985Triticum dicoccoidesTriticum turgidum37.818.88100192forward
CNT3086108Triticum dicoccoidesVigna radiata21.2610.7485.19108forward
CNT30508429Triticum dicoccoidesSolanum lycopersicum25.251.8285.94128forward
CNT30144304Triticum dicoccoidesMedicago truncatula22.8318.0481.9116forward
CNT3082721Triticum dicoccoidesBrassica juncea32.4857.0984.24165forward
CNT30471855Triticum dicoccoidesSaccharum spontaneum38.1921.0989.18194forward
CNT3013982Triticum dicoccoidesZea mays38.7867.9383.76197forward
CNT30650534Triticum dicoccoidesRosa chinensis68.737.4585.96349forward
CNT30212612Triticum dicoccoidesHelianthus annuus21.6545.6483.64110forward
CNT30624603Triticum dicoccoidesDaucus carota51.5739.783.21262forward
CNT30681758Triticum dicoccoidesTriticum urartu50.9837.98100259forward
CNT30570674Triticum dicoccoidesVitis vinifera73.6239.6284.76374forward
CNT3055164Triticum dicoccoidesAmborella trichopoda54.332484.06276forward
CNT3025883Triticum dicoccoidesPopulus trichocarpa74.2133.5784.08377forward
CNT30101810Triticum dicoccoidesOryza rufipogon39.767.9787.62202forward
CNT30116702Triticum dicoccoidesOryza nivara23.0311.3990.6117forward
CNT30174554Triticum dicoccoidesVigna angularis74.852.9279.47380forward
CNT30113343Triticum dicoccoidesFicus carica34.4549.4486.86175forward

Expression of CNT30662024

Peptides detected in this lncRNA

>peptide 1 (55 aa)
DHRLDDMLLEVRSNLIIGDSLIMLGGDQNSVHTYRNHGTSLVEVFNRDLGFAIRP*

>peptide 2 (91 aa)
GITGLMTCSLRSAAISSLVTVSSCWVEIRTVCTRTGTMAPPSLRYSTVTWVLPSGLSQAQVPFLRTSVRRAPSLVASTWLRGMSSGVSSVA*

>peptide 3 (84 aa)
MAEGHELRGLIGGIAKHDTLVTSTNILRALGEMSVHTLGNVRRLLLYVDKQPCCQRLGRGTRQAQRRRPGRRACQGGPRSQTQR*

>peptide 4 (74 aa)
MIPWSPAPISSGRLVKCPCTPWAMSGDCCSMLTSNLAVSVLGEARVKHSVGDLVAELVRVALVHRLRGEEESLGR

Sequence

>CNT30662024
GGGATCACCGGCTTGATGACATGCTCCTTGAGGTCCGCAGCAATCTCATCATTGGTGACAGTCTCATCATGCTGGGTGGAGATCAGAACAGTGTGCACAC
GTACAGGAACCATGGCACCTCCCTCGTTGAGGTATTCAACCGTGACCTGGGTTTTGCCATCAGGCCTTAGCCAGGCACAAGTGCCATTCTTGCGGACTTC
AGTGAGGCGGGCACCCAGCTTGGTGGCAAGCACATGGCTGAGGGGCATGAGCTCAGGGGTCTCATCGGTGGCATAGCCAAACATGATACCCTGGTCACCA
GCACCAATATCCTCAGGGCGCTTGGTGAAATGTCCGTGCACACCCTGGGCAATGTCAGGAGACTGCTGCTCTATGTTGACAAGCAACCTTGCTGTCAGCG
TCTTGGGCGAGGCACGCGTCAAGCACAGCGTCGGAGACCTGGTCGCAGAGCTTGTCAGGGTGGCCCTCGTTCACAGACTCAGAGGTGAAGAGGAAAGTCT
CGGTCGCC