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Detailed information on CNT30172560


BLAST search results

BLAST vs Swiss-Prot:
sp|A4PU48|METK_MEDTR, E-value = 1e-136

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Trifolium pratenseSetaria viridis35.130.8485.36239forward
CNT30520816Trifolium pratenseSetaria italica41.732.8785.21284forward
CNT30641080Trifolium pratenseNymphaea colorata88.1167.0481.17600forward
CNT30549537Trifolium pratenseIpomoea triloba49.3450.4583.33336forward
CNT30515028Trifolium pratenseJuglans regia33.3326.7484.58227forward
CNT30698521Trifolium pratenseQuercus lobata21.1525.6786.11144forward
CNT30373104Trifolium pratenseArabidopsis thaliana43.4735.2883.45296forward
CNT30618114Trifolium pratenseSesamum indicum32.4548.8983.71221forward
CNT3021108Trifolium pratenseCitrullus lanatus44.3518.3584.77302forward
CNT30729048Trifolium pratenseCorchorus capsularis32.7533.9986.55223forward
CNT30381460Trifolium pratenseManihot esculenta44.9333.384.31306forward
CNT30402638Trifolium pratenseBeta vulgaris44.6423.7383.88304forward
CNT30524774Trifolium pratensePhaseolus vulgaris48.3145.3887.23329forward
CNT30628391Trifolium pratenseVigna unguiculata47.8728.4288.65326forward
CNT30712616Trifolium pratenseGlycine max93.2578.1190.08635forward
CNT3047443Trifolium pratensePrunus dulcis31.5718.0286.05215forward
CNT30158121Trifolium pratensePistacia vera20.5622.487.86140forward
CNT30638840Trifolium pratenseCapsicum annuum87.3769.6780595forward
CNT30188757Trifolium pratenseSecale cereale38.0358.4783.01259forward
CNT30294498Trifolium pratenseTriticum aestivum25.8422.0385.23176forward
CNT30225924Trifolium pratenseHordeum vulgare26.1431.6284.83178forward
CNT30389985Trifolium pratenseTriticum turgidum39.0626.1682.71266forward
CNT30508528Trifolium pratenseSolanum lycopersicum32.7542.9782.06223forward
CNT30146819Trifolium pratenseMedicago truncatula44.6440.4892.76304forward
CNT30441436Trifolium pratenseAegilops tauschii37.4450.382.35255forward
CNT3059692Trifolium pratenseArabidopsis lyrata9.121.4590.3262forward
CNT30471290Trifolium pratenseSaccharum spontaneum35.2426.7384.58240forward
CNT3013982Trifolium pratenseZea mays28.6367.2482.56195forward
CNT30608385Trifolium pratenseGossypium raimondii32.7540.5584.3223forward
CNT30218668Trifolium pratenseKalanchoe fedtschenkoi36.1263.5781.3246forward
CNT3066706Trifolium pratenseLeersia perrieri19.0938.2486.15130forward
CNT30624603Trifolium pratenseDaucus carota36.4237.5883.87248forward
CNT30686785Trifolium pratenseTriticum urartu39.6526.7382.59270forward
CNT30349162Trifolium pratenseEragrostis tef44.6433.3785.86304forward
CNT30477100Trifolium pratenseArabidopsis halleri13.5123.2984.7892forward
CNT30367875Trifolium pratenseSorghum bicolor31.1325.6384.43212forward
CNT30597069Trifolium pratenseOryza meridionalis34.9511.8985.29238forward
CNT3055164Trifolium pratenseAmborella trichopoda31.4218.6180.84214forward
CNT3022562Trifolium pratensePopulus trichocarpa44.3519.3185.43302forward
CNT30148817Trifolium pratenseBrachypodium distachyon67.1139.5381.18457forward
CNT30496713Trifolium pratenseDigitaria exilis46.2620.9280.32315forward
CNT30594307Trifolium pratenseEragrostis curvula11.0121.3786.6775forward
CNT30551132Trifolium pratenseOryza brachyantha14.6825.9183100forward
CNT30113329Trifolium pratenseFicus carica33.9221.4583.98231forward
CNT30725876Trifolium pratenseLupinus angustifolius30.2520.7989.81206forward

Expression of CNT30172560

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRTTNDKAAGRVKVEDGLLIQVLLWNYRLDNMLLKISGNLVVTDSLIMLCRNEDSVDTNWNHSTILIVVLNSNLCL

>peptide 2 (38 aa)
MKLEQCICEQDRWQRYSLLPASQHRHLHRELPIHHRYQ*

>peptide 3 (63 aa)
MTKRPEGLRWKMVFSSKYFSGITGLITCSLRSAAIWSLLTVSSCCVEMRTVWTRIGTIAPFSL*

Sequence

>CNT30172560
CAACAAACATTGAAGGGACAAATATAAAAATCCGACAACACAATTCTTAAGCTTGAGGCTTCTCCCACTTGAGTGGCTTCACAACTTCCCAGGTGAAATC
AGGATCATCCCTTCCAAAGTGTCCATAAGCAGCTGTTTTAAGAAACCTGTTGCCACCCCTCTTAAGGTCCAAGTTAATGGTGATCATTCCGGGTCTGAAG
TCGAAGTTCTCCTTCACAATTTGAAGAATCTCCTTGTCGGGAATCTTTCCAGTTCCGTAACTGTCAACAAAGACTGACAAAGGCTCGGGCACACCGATGG
CGTATGAAACTTGAACAATGCATCTGCGAGCAAGACCGTTGGCAACGATACTCTTTGCTGCCTGCCTCACAACATAGGCACCTCCACCGTGAGCTCCCCA
TCCACCATAGGTATCAATGATGATCTTTCTTCCGGTTAGACCGGCATCACCATGAGGACCACCAATGACAAAGCGGCCGGAAGGGTTAAGGTGGAAGATG
GTCTTCTCATCCAAGTACTTCTCTGGAATTACAGGCTTGATAACATGCTCCTTAAGATCAGCGGCAATCTGGTCGTTACTGACAGTCTCATCATGTTGTG
TAGAAATGAGGACAGTGTGGACACGAATTGGAACCATAGCACCATTCTCATTGTAGTACTCAACAGTAACTTGTGTCTTTC