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Detailed information on CNT30358838


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 7e-93

BLAST vs NONCODE:
NONATHT001922, E-value = 3e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Lactuca sativaSetaria viridis40.235.4882.55275forward
CNT30520816Lactuca sativaSetaria italica40.231.8382.18275forward
CNT30641080Lactuca sativaNymphaea colorata29.2422.3584200forward
CNT30549537Lactuca sativaIpomoea triloba22.6623.2786.45155forward
CNT30373104Lactuca sativaArabidopsis thaliana51.6142.0781.87353forward
CNT3021108Lactuca sativaCitrullus lanatus34.9414.5281.59239forward
CNT30729630Lactuca sativaCorchorus capsularis35.8229.9185.31245forward
CNT30381493Lactuca sativaManihot esculenta40.6437.1282.73278forward
CNT30402638Lactuca sativaBeta vulgaris36.719.5983.27251forward
CNT30524807Lactuca sativaPhaseolus vulgaris28.2221.8881.35193forward
CNT30194995Lactuca sativaPisum sativum30.4121.8584.13208forward
CNT30711739Lactuca sativaGlycine max24.8514.281.18170forward
CNT3047442Lactuca sativaPrunus dulcis28.3632.0182.99194forward
CNT30638840Lactuca sativaCapsicum annuum21.3517.182.19146forward
CNT3090332Lactuca sativaSolanum tuberosum19.320.3181.06132forward
CNT30188757Lactuca sativaSecale cereale19.1529.5783.97131forward
CNT30292894Lactuca sativaTriticum aestivum24.4229.1482.63167forward
CNT30225924Lactuca sativaHordeum vulgare36.744.5879.68251forward
CNT30389985Lactuca sativaTriticum turgidum24.4216.4282.63167forward
CNT30508545Lactuca sativaSolanum lycopersicum17.428.7488.24119forward
CNT30144304Lactuca sativaMedicago truncatula39.3341.8484.01269forward
CNT30437887Lactuca sativaAegilops tauschii24.4223.8682.04167forward
CNT30471290Lactuca sativaSaccharum spontaneum30.9923.6182.55212forward
CNT3013982Lactuca sativaZea mays16.964081.03116forward
CNT30608385Lactuca sativaGossypium raimondii28.835.8283.25197forward
CNT30624603Lactuca sativaDaucus carota36.738.0380.88251forward
CNT30686069Lactuca sativaTriticum urartu30.9924.9180.66212forward
CNT30477100Lactuca sativaArabidopsis halleri36.763.5482.47251forward
CNT30368062Lactuca sativaSorghum bicolor23.9814.9284.15164forward
CNT30620815Lactuca sativaCajanus cajan24.7123.1282.25169forward
CNT30597069Lactuca sativaOryza meridionalis24.428.3583.83167forward
CNT30429132Lactuca sativaPapaver somniferum35.8215.4581.22245forward
CNT30571189Lactuca sativaVitis vinifera27.4930.5284.04188forward
CNT3055182Lactuca sativaAmborella trichopoda45.4729.4280.06311forward
CNT3022562Lactuca sativaPopulus trichocarpa40.217.5881.82275forward
CNT3035650Lactuca sativaCucumis melo35.3817.9583.47242forward
CNT30148817Lactuca sativaBrachypodium distachyon22.0813.0682.12151forward
CNT30725340Lactuca sativaLupinus angustifolius45.6130.9280.13312forward

Expression of CNT30358838

Peptides detected in this lncRNA

>peptide 1 (36 aa)
VKSGSVLPKCPYAAVFKNLPFPPLLRSRLIDIIPVP*

>peptide 2 (49 aa)
MVWTRRGTMAPLSLWYSTVTCVFPSGLSHAQVPFFRTSVNLAPSLVART*

>peptide 3 (52 aa)
CEIRICPTKMSIRRRFQKPPISTSFKIKINRYHSSSISVNKHRQWLRDTNGV*

>peptide 4 (82 aa)
MTCSLRSAAISSFVTNGVDTKRNHGSVVIMVFHRHLCLSVGSQPCTGAVFPDFSQFGAKFGGEDVTERHQFRGFISGVTKHMA

>peptide 5 (60 aa)
MAQGHQWRMTPEQSLSSPTHKPQCSLPPVSQYTPHSCPPSLGLSRRKHHLREHPNHRMCR*

>peptide 6 (95 aa)
MRTTDHKTTRRVEMEDGFFIKVVFRDDWFDDVFLEISCDFIVCYKWCGHEEEPWLRCHYGIPPSLVSFRRVSAMHRCRFSGLQSIWRQVWWRGRD*

Sequence

>CNT30358838
ATGTGAAATCAGGATCTGTCCTACCAAAATGTCCATACGCCGCCGTTTTCAAAAACCTCCCATTTCCACCTCTTTTAAGATCAAGATTAATCGATATCAT
TCCAGTTCCATAAGTGTCAACAAACACCGACAATGGCTCAGGGACACCAATGGCGTATGACACCTGAACAATCGCTCTCCTCGCCAACCCACAAGCCACA
ATGCTCTTTGCCGCCTGTCTCACAATATACGCCCCACTCCTGTCCACCTTCGTTGGGTCTTTCCCGGAGAAAGCACCACCTCCGTGAGCACCCCAACCAC
CGTATGTGTCGATGATGATTTTCCGGCCAGTCAGTCCGGCGTCACCATGAGGACCACCGATCACAAAACGACCAGAAGGGTTGAGATGGAAGATGGTTTT
TTCATCAAGGTAGTTTTCAGGGACGACTGGTTTGATGACGTGTTCCTTGAGATCAGCTGCGATTTCATCGTTTGTTACAAATGGTGTGGACACGAAGAGG
AACCATGGCTCCGTTGTCATTATGGTATTCCACCGTCACTTGTGTCTTTCCGTCGGGTCTCAGCCATGCACAGGTGCCGTTTTTCCGGACTTCAGTCAAT
TTGGCGCCAAGTTTGGTGGCGAGGACGTGACTGAGCGGCATCAGTTCAGGGGTTTCATCAGTGGCGTAACCAAACATATGGCCC