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Detailed information on CNT30471290


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 6e-129

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Saccharum spontaneumSetaria viridis83.8594.8493.49753forward
CNT30520816Saccharum spontaneumSetaria italica63.2565.7494.72568forward
CNT30641080Saccharum spontaneumNymphaea colorata25.9526.0388.84233forward
CNT30549537Saccharum spontaneumIpomoea triloba48.5565.4781.19436forward
CNT30698521Saccharum spontaneumQuercus lobata22.4936.0188.12202forward
CNT30374620Saccharum spontaneumArabidopsis thaliana29.7330.8386.89267forward
CNT30618114Saccharum spontaneumSesamum indicum25.2850.2282.82227forward
CNT30266729Saccharum spontaneumChenopodium quinoa49.6734.683.41446forward
CNT3021108Saccharum spontaneumCitrullus lanatus50.6727.6483.3455forward
CNT30729630Saccharum spontaneumCorchorus capsularis45.6650.0681.95410forward
CNT30381460Saccharum spontaneumManihot esculenta52.4551.2585.35471forward
CNT30402638Saccharum spontaneumBeta vulgaris44.6531.386.28401forward
CNT30524850Saccharum spontaneumPhaseolus vulgaris26.1732.5587.66235forward
CNT30628391Saccharum spontaneumVigna unguiculata62.0348.5681.69557forward
CNT30712616Saccharum spontaneumGlycine max26.7329.5286.67240forward
CNT30158121Saccharum spontaneumPistacia vera20.4929.4490.22184forward
CNT30638840Saccharum spontaneumCapsicum annuum23.1624.3687.02208forward
CNT30189384Saccharum spontaneumSecale cereale49.5556.6282.47445forward
CNT30294498Saccharum spontaneumTriticum aestivum48.3354.3288.02434forward
CNT30225924Saccharum spontaneumHordeum vulgare4978.1585.91440forward
CNT30389985Saccharum spontaneumTriticum turgidum52.4546.3187.69471forward
CNT30561874Saccharum spontaneumActinidia chinensis46.146.9484.3414forward
CNT30508545Saccharum spontaneumSolanum lycopersicum12.9228.0287.07116forward
CNT30172560Saccharum spontaneumTrifolium pratense26.7335.2484.58240forward
CNT30146819Saccharum spontaneumMedicago truncatula31.6337.8283.8284forward
CNT30437887Saccharum spontaneumAegilops tauschii42.4354.4387.66381forward
CNT30667060Saccharum spontaneumTriticum dicoccoides42.259.6985.75379forward
CNT3014998Saccharum spontaneumZea mays30.1848.9293.36271forward
CNT30608385Saccharum spontaneumGossypium raimondii44.5472.7384.75400forward
CNT30218287Saccharum spontaneumKalanchoe fedtschenkoi33.6358.1983.77302forward
CNT3066706Saccharum spontaneumLeersia perrieri23.2761.4785.17209forward
CNT30624603Saccharum spontaneumDaucus carota29.7340.4586.89267forward
CNT30686785Saccharum spontaneumTriticum urartu54.0148.0287.01485forward
CNT30349162Saccharum spontaneumEragrostis tef41.0940.594.31369forward
CNT30477100Saccharum spontaneumArabidopsis halleri15.3734.9486.23138forward
CNT30367696Saccharum spontaneumSorghum bicolor78.481.8694.89704forward
CNT30620815Saccharum spontaneumCajanus cajan19.7124.2187.01177forward
CNT30597069Saccharum spontaneumOryza meridionalis55.2324.7991.73496forward
CNT30358838Saccharum spontaneumLactuca sativa23.6130.9982.55212forward
CNT30420528Saccharum spontaneumPapaver somniferum35.0816.5384.13315forward
CNT30571189Saccharum spontaneumVitis vinifera20.4929.8791.85184forward
CNT3055182Saccharum spontaneumAmborella trichopoda51.2243.5280.43460forward
CNT3022562Saccharum spontaneumPopulus trichocarpa54.3431.283.61488forward
CNT30331991Saccharum spontaneumDioscorea rotundata25.7248.8484.85231forward
CNT30101941Saccharum spontaneumOryza rufipogon48.3351.9891.71434forward
CNT30574675Saccharum spontaneumOryza barthii20.2740.3584.62182forward
CNT30496713Saccharum spontaneumDigitaria exilis50.5630.1593.83454forward
CNT30116792Saccharum spontaneumOryza nivara16.5923.1794.63149forward
CNT30551132Saccharum spontaneumOryza brachyantha11.827.4695.28106forward
CNT30113329Saccharum spontaneumFicus carica23.7219.7887.79213forward
CNT30725315Saccharum spontaneumLupinus angustifolius53.6747.9183.82482forward

Expression of CNT30471290

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIRADQESQHIEAIMKHDKRSRPKASSEKGAP*

>peptide 2 (42 aa)
MMIMPGLKSKFSFTILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 3 (43 aa)
TALQYITKMHEVPLLLKVAVGCSFFHCFKHYISSETRNNPLGN*

>peptide 4 (50 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSFRSAAISSLVTVSSCWVEMRTV

>peptide 5 (75 aa)
MGSPATIGVNDDLPASKTSITMRSTNDKATRWVKVEDGLLVKVLLRDDRLDDMLLQVSSNLIIGDCLVVLGRDEDS

Sequence

>CNT30471290
CACAGCATTGCAATATATAACCAAAATGCACGAGGTCCCATTACTTCTCAAAGTAGCTGTAGGCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAAGC
AGTGAAACCAGAAATAATCCTCTAGGTAATTAAGCAGACACAGTAAGACCCTCACAAGTACCACTTATTAGGACAGTACAAATACAAATGATAAGGGCAG
ATCAAGAATCACAACATATAGAAGCCATAATGAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTGAAAAAGGGGCGCCTTAGGCAGAAGGCTTCTC
CGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCAAAGTGTCCGTAGGCCGCCGTCTTGAGGTAGCGCCCATTGCCGCCTTTC
TTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCGGTGCCGTACG
TGTCAACAAACACAGAGAGAGGCTCGGGCACACCGATGGCGTAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCGTTGGCGACAATGCTCTTGGCAGC
CTGCCTTGCGACGTAGGCTCCACTGCGGTCGACCTTGGTTGGGTCCTTGCCAGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCATAGGTGTCAATG
ATGATCTTCCGGCCAGTAAGACCAGCATCACCATGAGGTCCACCAATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACT
GCTCAGGGATGACAGGCTTGATGACATGCTCCTTCAGGTCAGCAGCAATCTCATCATTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTG