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Detailed information on CNT30549537


BLAST search results

BLAST vs Swiss-Prot:
sp|A4PU48|METK_MEDTR, E-value = 4e-107

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Ipomoea trilobaSetaria viridis66.2255.5481.86441forward
CNT30521184Ipomoea trilobaSetaria italica66.2219.1881.63441forward
CNT30641080Ipomoea trilobaNymphaea colorata45.3533.7482.45302forward
CNT30698521Ipomoea trilobaQuercus lobata34.2340.6487.28228forward
CNT30372626Ipomoea trilobaArabidopsis thaliana66.5269.1181.72443forward
CNT30618114Ipomoea trilobaSesamum indicum32.7348.2384.86218forward
CNT30266729Ipomoea trilobaChenopodium quinoa68.6235.4581.4457forward
CNT30729630Ipomoea trilobaCorchorus capsularis60.8149.4584.2405forward
CNT30381458Ipomoea trilobaManihot esculenta48.0545.5882.81320forward
CNT30402686Ipomoea trilobaBeta vulgaris32.8836.3285.84219forward
CNT30524807Ipomoea trilobaPhaseolus vulgaris58.4144.184.32389forward
CNT30628391Ipomoea trilobaVigna unguiculata65.0237.7584.3433forward
CNT30490001Ipomoea trilobaOlea europaea39.0452.4286.15260forward
CNT30712486Ipomoea trilobaGlycine max53.7544.6981.84358forward
CNT3047443Ipomoea trilobaPrunus dulcis51.228.5886.22341forward
CNT30188823Ipomoea trilobaSecale cereale45.6535.8580.92304forward
CNT30294498Ipomoea trilobaTriticum aestivum52.2543.5582.47348forward
CNT30225924Ipomoea trilobaHordeum vulgare5059.1581.68333forward
CNT30389985Ipomoea trilobaTriticum turgidum46.730.5882.64311forward
CNT30561874Ipomoea trilobaActinidia chinensis52.139.3485.3347forward
CNT30508528Ipomoea trilobaSolanum lycopersicum32.1341.2383.18214forward
CNT30172560Ipomoea trilobaTrifolium pratense50.4549.3483.33336forward
CNT30146819Ipomoea trilobaMedicago truncatula37.3933.1684.34249forward
CNT30437887Ipomoea trilobaAegilops tauschii46.744.4382.64311forward
CNT30667060Ipomoea trilobaTriticum dicoccoides50.1552.681.44334forward
CNT3059692Ipomoea trilobaArabidopsis lyrata13.8131.8385.8792forward
CNT30471290Ipomoea trilobaSaccharum spontaneum65.4748.5581.19436forward
CNT3014998Ipomoea trilobaZea mays24.6229.684.15164forward
CNT30606743Ipomoea trilobaGossypium raimondii65.3240.7382.99435forward
CNT30218668Ipomoea trilobaKalanchoe fedtschenkoi36.3462.5385.12242forward
CNT3066706Ipomoea trilobaLeersia perrieri31.3861.4782.78209forward
CNT30650282Ipomoea trilobaRosa chinensis63.3635.8284.83422forward
CNT30626924Ipomoea trilobaDaucus carota43.2422.8484.38288forward
CNT30686069Ipomoea trilobaTriticum urartu5039.1381.08333forward
CNT30477100Ipomoea trilobaArabidopsis halleri34.0857.4784.14227forward
CNT30367696Ipomoea trilobaSorghum bicolor65.4750.782.11436forward
CNT30620812Ipomoea trilobaCajanus cajan4725.284.98313forward
CNT30597069Ipomoea trilobaOryza meridionalis51.217.0483.58341forward
CNT30358838Ipomoea trilobaLactuca sativa23.2722.6686.45155forward
CNT30432398Ipomoea trilobaPapaver somniferum67.1236.8284.34447forward
CNT30570674Ipomoea trilobaVitis vinifera53.938.0386.07359forward
CNT3055182Ipomoea trilobaAmborella trichopoda49.8531.4181.02332forward
CNT3022568Ipomoea trilobaPopulus trichocarpa57.2127.5784.25381forward
CNT30331991Ipomoea trilobaDioscorea rotundata31.5344.484.29210forward
CNT30148817Ipomoea trilobaBrachypodium distachyon38.8922.482.24259forward
CNT30101941Ipomoea trilobaOryza rufipogon64.4151.3881.59429forward
CNT30496713Ipomoea trilobaDigitaria exilis66.2229.2880.73441forward
CNT30174546Ipomoea trilobaVigna angularis29.1325.3685.57194forward
CNT30551132Ipomoea trilobaOryza brachyantha11.8620.4789.8779forward
CNT30113329Ipomoea trilobaFicus carica30.4818.8584.24203forward
CNT30725315Ipomoea trilobaLupinus angustifolius66.2243.8483.45441forward

Expression of CNT30549537

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLLEITSNFVIGDSLIMLSRDQNSVYTDRNHGTIVIVVLNSDLSFTIRSEPSAGPIL

>peptide 2 (40 aa)
MVQAHQWHMTPAQCTYEQARWQQCSWQLASQHRLHFCPPW*

>peptide 3 (89 aa)
INLSLRFVPLERLHHFPCEVRVIPTEMAISSGLQEPAVATPLEVQVDGDHTRPEIKVLLHNLEDFLVGNLSGSIGIYEDRQWFRHTNGI*

>peptide 4 (29 aa)
MRYFSGITGLMTCSLRSRAISSLVTVSSC*

Sequence

>CNT30549537
ATATCAATTTAAGCTTGAGGTTTGTCCCACTTGAGAGGCTTCACCACTTCCCATGTGAAGTCAGGGTCATCCCTACCGAAATGGCCATAAGCAGCGGTCT
TCAAGAACCTGCTGTTGCCACCCCTCTTGAGGTCCAGGTTGATGGCGATCATACCAGGCCTGAAATCAAAGTGCTCCTTCACAATCTTGAGGATTTCCTT
GTCGGGAATCTTTCCGGTTCCATAGGTATCTACGAAGACAGACAATGGTTCAGGCACACCAATGGCATATGACACCTGCACAATGCACCTACGAGCAAGC
CCGTTGGCAACAATGCTCTTGGCAGCTTGCCTCACAACATAGGCTCCACTTCTGTCCACCTTGGTAGGGTCTTTCCCTGAGAAAGCACCTCCTCCGTGAG
CACCCCATCCACCGTATGTGTCAATAATGATCTTGCGGCCAGTGAGCCCAGCATCACCATGAGGTACTTCTCGGGAATCACAGGCTTGATGACATGCTCC
TTGAGATCACGAGCAATTTCGTCATTGGTGACAGTCTCATCATGCTGAGTAGAGATCAAAACAGTGTGTACACGGACAGGAACCATGGCACCATTGTCAT
TGTAGTACTCAACAGTGACCTGAGTTTTACCATCAGGTCTGAGCCAAGCGCAGGTCCCATCCTTCC