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Detailed information on CNT30520816


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-129

BLAST vs NONCODE:
NONPOPT000587, E-value = 4e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641080Setaria italicaNymphaea colorata30.5629.588.26264forward
CNT30373104Setaria italicaArabidopsis thaliana63.0864.9681.1545forward
CNT30618114Setaria italicaSesamum indicum21.4140.9382.7185forward
CNT3021108Setaria italicaCitrullus lanatus38.4320.1785.24332forward
CNT30729630Setaria italicaCorchorus capsularis47.4550.0682.93410forward
CNT30381460Setaria italicaManihot esculenta57.6454.1984.94498forward
CNT30402638Setaria italicaBeta vulgaris54.436.6985.32470forward
CNT30524850Setaria italicaPhaseolus vulgaris38.6646.2683.53334forward
CNT30628391Setaria italicaVigna unguiculata60.0745.2581.89519forward
CNT30194995Setaria italicaPisum sativum24.1921.9584.21209forward
CNT30712616Setaria italicaGlycine max31.4833.4684.93272forward
CNT30158121Setaria italicaPistacia vera21.329.4490.76184forward
CNT30638840Setaria italicaCapsicum annuum24.6524.9487.79213forward
CNT3090332Setaria italicaSolanum tuberosum21.7628.9288.83188forward
CNT30181754Setaria italicaSecale cereale32.2944.3687.81279forward
CNT30294498Setaria italicaTriticum aestivum50.2354.3288.02434forward
CNT30389985Setaria italicaTriticum turgidum59.9550.9386.87518forward
CNT30561874Setaria italicaActinidia chinensis48.3847.3985.89418forward
CNT30172560Setaria italicaTrifolium pratense32.8741.785.21284forward
CNT30146819Setaria italicaMedicago truncatula33.838.8884.59292forward
CNT30437887Setaria italicaAegilops tauschii44.154.4387.4381forward
CNT30471290Setaria italicaSaccharum spontaneum65.7463.2594.72568forward
CNT30624603Setaria italicaDaucus carota35.6546.6786.36308forward
CNT30686785Setaria italicaTriticum urartu57.5249.2186.12497forward
CNT30349162Setaria italicaEragrostis tef48.6146.192.38420forward
CNT30620815Setaria italicaCajanus cajan20.4924.2185.31177forward
CNT30597069Setaria italicaOryza meridionalis57.4124.7991.33496forward
CNT30358838Setaria italicaLactuca sativa31.8340.282.18275forward
CNT30420528Setaria italicaPapaver somniferum36.6916.6383.91317forward
CNT30571189Setaria italicaVitis vinifera21.329.8790.22184forward
CNT3055182Setaria italicaAmborella trichopoda48.8439.9281.75422forward
CNT3022562Setaria italicaPopulus trichocarpa62.2734.483.83538forward
CNT3035650Setaria italicaCucumis melo47.1130.1983.78407forward
CNT30113329Setaria italicaFicus carica25.9320.887.5224forward
CNT30725315Setaria italicaLupinus angustifolius59.2650.8984.38512forward

Expression of CNT30520816

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKSGSSLPK*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 3 (67 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVWTRMGTIAPPSLRYSTV

>peptide 4 (71 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDSVDTDGDHRTTLIAVLNS

Sequence

>CNT30520816
CTCAAAGTAGCCTGCAGCTTCATTCTTTGGTTCACCATTACATAAACAGCAAAACCAGAAATAGCAGACAATAATTCCTCCTCTAGGTAAATAACCAGAC
ACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACAAAACATGAT
AAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGC
CCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCG
TGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGAC
AATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCCCAGCCA
CCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCT
TCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGA
GATGAGGACAGTGTGGACACGGATGGGGACCATCGCACCACCCTCATTGCGGTACTCAACAGTC