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Detailed information on CNT3055164


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96552|METK2_CATRO, E-value = 3e-165

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673153Amborella trichopodaSetaria viridis18.732.8286.51215forward
CNT30549907Amborella trichopodaIpomoea triloba20.744.3280.67238forward
CNT30515028Amborella trichopodaJuglans regia37.4850.7781.9431forward
CNT30618114Amborella trichopodaSesamum indicum18.4346.980.66212forward
CNT30266631Amborella trichopodaChenopodium quinoa36.8748.480.66424forward
CNT3021108Amborella trichopodaCitrullus lanatus24.8717.3881.82286forward
CNT30381524Amborella trichopodaManihot esculenta34.748.2582.21399forward
CNT30402638Amborella trichopodaBeta vulgaris34.9631.3883.33402forward
CNT30628634Amborella trichopodaVigna unguiculata34.6155.2880.9398forward
CNT30712486Amborella trichopodaGlycine max42.761.381.06491forward
CNT3047443Amborella trichopodaPrunus dulcis30.4329.3484.86350forward
CNT30638840Amborella trichopodaCapsicum annuum38.7852.2280.49446forward
CNT3090332Amborella trichopodaSolanum tuberosum16.0928.4683.24185forward
CNT30188757Amborella trichopodaSecale cereale34.7890.2982.25400forward
CNT30225701Amborella trichopodaHordeum vulgare12.8729.0885.81148forward
CNT30389985Amborella trichopodaTriticum turgidum24.2627.4383.87279forward
CNT30172560Amborella trichopodaTrifolium pratense18.6131.4280.84214forward
CNT30144304Amborella trichopodaMedicago truncatula25.7446.0381.08296forward
CNT30441436Amborella trichopodaAegilops tauschii19.343.7984.23222forward
CNT30662024Amborella trichopodaTriticum dicoccoides2454.3384.06276forward
CNT3082721Amborella trichopodaBrassica juncea5.1320.4289.8359forward
CNT3013982Amborella trichopodaZea mays22.3588.6284.05257forward
CNT3066706Amborella trichopodaLeersia perrieri11.5739.1286.47133forward
CNT30650534Amborella trichopodaRosa chinensis22.2627.4781.25256forward
CNT30212612Amborella trichopodaHelianthus annuus5.325.3193.4461forward
CNT30626924Amborella trichopodaDaucus carota29.4826.8880.83339forward
CNT30686785Amborella trichopodaTriticum urartu20.0922.8785.28231forward
CNT30349162Amborella trichopodaEragrostis tef24.2630.6383.51279forward
CNT30367875Amborella trichopodaSorghum bicolor18.3525.5184.36211forward
CNT30570759Amborella trichopodaVitis vinifera21.0443.0684.3242forward
CNT3022562Amborella trichopodaPopulus trichocarpa3626.4782.13414forward
CNT3035650Amborella trichopodaCucumis melo26.7822.8581.17308forward
CNT30174546Amborella trichopodaVigna angularis29.3944.1881.95338forward
CNT30113329Amborella trichopodaFicus carica18.7820.0685.19216forward
CNT30725315Amborella trichopodaLupinus angustifolius29.4833.781.71339forward

Expression of CNT3055164

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGLIIEKFRVKELQSFASKYQSTNTLCSQPLKTKTANKPPKEGNQKKKKRTTIIHTNTYNNQ*

>peptide 2 (66 aa)
MILRPVSPASPCGPPITKRPDGLRWKMVFSSRYLAGTTGLITCSLRSAAISSLVTVSSCWVEISTV*

>peptide 3 (68 aa)
QVKNNYTNIINKLLAYELPSDAAALKSHQGFIDGVDHREIPSQRITVFRFQIPVHKYFMLPTLKNKNS*

>peptide 4 (69 aa)
MLLEVSCNLIIGHSLIVLGRDQHSVNTNRYHGSAIIEVFNSHLGLAIRAQPWAGPVLSYLGEPSAQLGG*

>peptide 5 (34 aa)
MRPAQCTYEPNLKPQHSWQPGEQCRPRSYQPWCQ*

>peptide 6 (45 aa)
MAQWHELRGLVSCISKHVAVDTLGNIRALLLDVDKDLAVISVKADI

>peptide 7 (57 aa)
MKISCFNYAVVVAAAVLRNLPLPPLLRSRSIAIIPGLKSKFSFTIFNISLSGIRPVP*

>peptide 8 (79 aa)
MAPPSLKYSTVTWVLPSGRSHGQVPFFRTSVSRAPSLVASTWLSGMSSGVSSVAYPNMWPWTPWAISGLCCSMLTRTLQ*

>peptide 9 (74 aa)
MDEDLMFQLCGGCSGCSLKEPPITSSLEVEVDSNHSRPEVEVLLHNLQYILIRDQASSIGVHKNGEWLGDTNGV*

Sequence

>CNT3055164
TTCAAGTGAAAAATAATTACACAAACATCATCAATAAATTGCTTGCGTACGAGTTACCAAGTGACGCTGCTGCCTTGAAAAGTCACCAAGGTTTTATAGA
TGGGGTTGATCATAGAGAAATTCCGAGTCAAAGAATTACAGTCTTTCGCTTCCAAATACCAGTCCACAAATACTTTATGCTCCCAACCCTTAAAAACAAA
AACAGCTAATAAACCACCAAAGGAAGGCAACCAAAAAAAAAAAAAAAGAACCACCATAATTCATACAAACACTTATAACAACCAGTAGAAATAATAGTAG
AATTCGGCATCTTATTGGCCGTCAGCTCGGAACATAAAGGGTCGAATCGATGGATGAAGATCTCATGTTTCAATTATGCGGTGGTTGTAGCGGCTGCAGT
CTTAAGGAACCTCCCATTACCTCCTCTCTTGAGGTCGAGGTCGATAGCAATCATTCCAGGCCTGAAGTCGAAGTTCTCCTTCACAATCTTCAATATATCC
TTATCAGGGATCAGGCCAGTTCCATAGGTGTCCACAAAAACGGAGAGTGGCTCGGGGACACCAATGGCGTATGAGACCTGCACAATGCACCTACGAGCCA
AACCTGAAGCCACAACACTCTTGGCAGCCTGGCGAACAATGTAGGCCCCGCTCCTATCAACCTTGGTGTCAATAATGATCTTGCGGCCGGTGAGCCCAGC
ATCCCCGTGCGGACCCCCGATCACAAAGCGGCCAGACGGGTTGAGGTGGAAGATGGTCTTCTCGTCAAGGTACTTGGCAGGAACCACAGGCTTGATCACA
TGCTCCTTGAGGTCAGCTGCAATCTCATCATTGGTCACAGTCTCATCGTGTTGGGTCGAGATCAGCACAGTGTGAACACGAACAGGTACCATGGCTCCGC
CATCATTGAAGTATTCAACAGTCACTTGGGTCTTGCCATCAGGGCGCAGCCATGGGCAGGTCCCGTTCTTTCGTACCTCGGTGAGCCGAGCGCCCAGCTT
GGTGGCTAGCACATGGCTCAGTGGCATGAGCTCCGGGGTCTCGTCAGTTGCATATCCAAACATGTGGCCGTGGACACCCTGGGCAATATCAGGGCTCTGT
TGCTCGATGTTGACAAGGACCTTGCAGTGATCAGCGTCAAGGCCGACATC