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Detailed information on CNT30628634


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 5e-161

BLAST vs NONCODE:
NONPOPT000587, E-value = 1e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Vigna unguiculataSetaria viridis39.0336.2686.12281forward
CNT30641080Vigna unguiculataNymphaea colorata38.7531.1783.87279forward
CNT30515028Vigna unguiculataJuglans regia54.3146.0583.38391forward
CNT30402638Vigna unguiculataBeta vulgaris99.0355.6684.15713forward
CNT30712616Vigna unguiculataGlycine max52.546.4992.86378forward
CNT3047443Vigna unguiculataPrunus dulcis49.7230.0185.75358forward
CNT30158121Vigna unguiculataPistacia vera43.4750.0887.22313forward
CNT30188757Vigna unguiculataSecale cereale59.7297.0779.3430forward
CNT30389985Vigna unguiculataTriticum turgidum46.5332.9483.58335forward
CNT30437887Vigna unguiculataAegilops tauschii29.8630.7185.12215forward
CNT30662024Vigna unguiculataTriticum dicoccoides51.5373.0381.13371forward
CNT3082721Vigna unguiculataBrassica juncea23.7559.1783.04171forward
CNT30650534Vigna unguiculataRosa chinensis42.7833.0584.74308forward
CNT30212612Vigna unguiculataHelianthus annuus17.3651.8784.8125forward
CNT30681758Vigna unguiculataTriticum urartu33.6135.4884.71242forward
CNT30349162Vigna unguiculataEragrostis tef56.1144.3582.92404forward
CNT30477100Vigna unguiculataArabidopsis halleri22.7841.5282.32164forward
CNT30429132Vigna unguiculataPapaver somniferum92.0841.878.88663forward
CNT30571189Vigna unguiculataVitis vinifera43.0650.3284.84310forward
CNT3055164Vigna unguiculataAmborella trichopoda55.2834.6180.9398forward
CNT3022562Vigna unguiculataPopulus trichocarpa94.8643.6783.02683forward
CNT30148817Vigna unguiculataBrachypodium distachyon25.691686.49185forward
CNT30101810Vigna unguiculataOryza rufipogon26.947.6586.08194forward
CNT30174554Vigna unguiculataVigna angularis59.4459.6183.18428forward
CNT30113343Vigna unguiculataFicus carica25.1451.1388.95181forward

Expression of CNT30628634

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MSTPATVGINDDLSSSETSITMGATNHKPARRVKVEDGLLIKVLLRNDRLDNMLFKVSSNLVIAHSFIVLGGN*

>peptide 2 (67 aa)
MMIFLPVRPASPWGPPITNRPEGLRWKMVFSSRYFSGMTGLITCSLRSAAIWSLLTVSLCWVEIRTV*

>peptide 3 (51 aa)
MAERHVFRGFVSGIAKHVTLVTGTNLLRPLGEVAVHTLGDIRALLLDVDQHL

>peptide 4 (74 aa)
RESFRFHRYQQRLTMAQGHRWHKKLGQCTFSQVHLPQHSLQPASQYRHHCGQPWWGPCPKRHHHHEHPSHRRYQ*

Sequence

>CNT30628634
GTCGGGAATCTTTCCGGTTCCATAGGTATCAACAAAGACTGACAATGGCTCAGGGACACCGATGGCATAAGAAACTTGGACAATGCACCTTCTCGCAAGT
CCATTTGCCACAACACTCTTTGCAGCCTGCCTCACAATATAGGCACCACTGCGGTCAACCTTGGTGGGGTCCTTGCCCGAAAAGGCACCACCACCATGAG
CACCCCAGCCACCGTAGGTATCAATGATGATCTTTCTTCCAGTGAGACCAGCATCACCATGGGGGCCACCAATCACAAACCGGCCCGAAGGGTTAAGGTG
GAAGATGGTCTTCTCATCAAGGTACTTCTCCGGAATGACAGGCTTGATAACATGCTCTTTAAGGTCAGCAGCAATTTGGTCATTGCTCACAGTTTCATTG
TGTTGGGTGGAAATTAGAACGGTGTGAACACGGACTGGAACCATGGCACCGTTGTCATTGTAGTACTCAACAGTCACTTGGGTTTTACCATCTGGCCTCA
ACCATCCACAGGTACCATTCTTCCTAACCTCGGTTAGGCGAGCACCGAGTTTGGTGGCAAGGACATGGCTGAGCGGCATGTATTCAGGGGTTTCGTCAGT
GGCATAGCCAAACATGTGACCCTGGTCACCGGCACCAACCTCCTCCGGCCGCTTGGTGAAGTGGCCGTGCACACCCTGGGCGATATCAGGGCTCTGCTGC
TCGATGTTGACCAACACCTT