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Detailed information on CNT30349162


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944U4|METK_DENCR, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Eragrostis tefSetaria viridis40.447.4892.66368forward
CNT30520816Eragrostis tefSetaria italica46.148.6192.38420forward
CNT30641080Eragrostis tefNymphaea colorata29.3129.8386.89267forward
CNT30549907Eragrostis tefIpomoea triloba27.2246.1884.68248forward
CNT30515028Eragrostis tefJuglans regia28.8730.9882.51263forward
CNT30698521Eragrostis tefQuercus lobata22.1736.0188.12202forward
CNT30374620Eragrostis tefArabidopsis thaliana29.8631.4187.5272forward
CNT30618114Eragrostis tefSesamum indicum20.3140.9380.54185forward
CNT30266631Eragrostis tefChenopodium quinoa21.7322.688.38198forward
CNT3021108Eragrostis tefCitrullus lanatus49.9527.6483.08455forward
CNT30729630Eragrostis tefCorchorus capsularis29.232.4886.84266forward
CNT30381460Eragrostis tefManihot esculenta49.9549.5185.05455forward
CNT30402638Eragrostis tefBeta vulgaris48.9634.8285.2446forward
CNT30524850Eragrostis tefPhaseolus vulgaris36.6646.2683.53334forward
CNT30628634Eragrostis tefVigna unguiculata44.3556.1182.92404forward
CNT30194995Eragrostis tefPisum sativum22.521.5383.41205forward
CNT30712616Eragrostis tefGlycine max35.1339.3685.94320forward
CNT3047443Eragrostis tefPrunus dulcis23.2717.7788.21212forward
CNT30638840Eragrostis tefCapsicum annuum25.827.5285.53235forward
CNT3090332Eragrostis tefSolanum tuberosum29.8641.8583.82272forward
CNT30190465Eragrostis tefSecale cereale21.4167.7191.79195forward
CNT30294498Eragrostis tefTriticum aestivum34.0338.886.77310forward
CNT30225924Eragrostis tefHordeum vulgare27.2244.0587.1248forward
CNT30389985Eragrostis tefTriticum turgidum49.5144.3586.47451forward
CNT30561874Eragrostis tefActinidia chinensis29.5330.584.76269forward
CNT30508545Eragrostis tefSolanum lycopersicum12.427.2986.73113forward
CNT30172560Eragrostis tefTrifolium pratense33.3744.6485.86304forward
CNT30146819Eragrostis tefMedicago truncatula34.0341.2885.16310forward
CNT30437887Eragrostis tefAegilops tauschii30.6339.8686.38279forward
CNT30667060Eragrostis tefTriticum dicoccoides20.3129.1387.03185forward
CNT30471290Eragrostis tefSaccharum spontaneum40.541.0994.31369forward
CNT3013982Eragrostis tefZea mays27.3385.8693.17249forward
CNT30608385Eragrostis tefGossypium raimondii23.8239.4585.25217forward
CNT3066706Eragrostis tefLeersia perrieri14.0537.6590.62128forward
CNT30650282Eragrostis tefRosa chinensis20.0915.5387.98183forward
CNT30624603Eragrostis tefDaucus carota30.1941.6786.55275forward
CNT30686785Eragrostis tefTriticum urartu37.7634.0685.76344forward
CNT30477100Eragrostis tefArabidopsis halleri15.1534.9485.51138forward
CNT30367875Eragrostis tefSorghum bicolor24.8127.3395.13226forward
CNT30620815Eragrostis tefCajanus cajan19.4324.2188.7177forward
CNT30597069Eragrostis tefOryza meridionalis40.518.4492.14369forward
CNT30420528Eragrostis tefPapaver somniferum42.5920.3684.28388forward
CNT3055164Eragrostis tefAmborella trichopoda30.6324.2683.51279forward
CNT3022562Eragrostis tefPopulus trichocarpa44.3525.8385.15404forward
CNT3035650Eragrostis tefCucumis melo44.0229.7583.29401forward
CNT30331991Eragrostis tefDioscorea rotundata22.0642.4983.58201forward
CNT30101941Eragrostis tefOryza rufipogon23.625.7590.7215forward
CNT30496713Eragrostis tefDigitaria exilis23.0513.9492.38210forward
CNT30174546Eragrostis tefVigna angularis24.2628.8985.07221forward
CNT30113329Eragrostis tefFicus carica24.2620.5286.88221forward
CNT30725315Eragrostis tefLupinus angustifolius37.133.686.39338forward

Expression of CNT30349162

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MTKRPDGFRWKMVFSSRYCSGMTGLMTCSFRSAAISSLVTVSSCWVEMRTVWTRTGTIAPPSLRYSTVTWVFPSGLSQG

>peptide 2 (44 aa)
RNFSQNTRSDQIIYEQHCHLKITKEHQALFLLNCRSFFHSFTIT*

>peptide 3 (83 aa)
MRSTNDKATGWVQMEDGLLVKVLLRDDRLDDMLLQVSSNLIIGDSLVMLGRDEDSVDTNWDHSTTLIAVLNSHLGLSIRPEPGA

Sequence

>CNT30349162
CCAGAAATTTCTCACAAAACACACGCTCAGATCAAATAATTTATGAGCAGCACTGCCATCTAAAAATAACTAAAGAGCACCAAGCTCTGTTTCTTCTCAA
TTGCCGTAGCTTCTTTCATTCTTTCACCATTACATAAGCAGCAAAACCAGGAATAACAGATAATAAATCCTCCTCTAGATAGATGACCAAGCACGACACC
CTTACAAGTACTTATTAAGAGAGTACAATACAGAGGATAAATGATAGCAAGAGGCAGCTTAAGAATCACAACGGAGAAGTCACAAAGCATGATAACACGA
TAGAACAAAAGCTTCTGAAAGGGTGGGTGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGCGTCGTCCCTTCC
GAAGTGACCGTAAGCTGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGGACACCAATGGCGTAGGAAACCTGGACAATGGCACGGCGAGCAAG
GCCATTTGCAACAATGCTCTTGGCAGCCTGCCTTGCAACGTAGGCTCCACTGCGGTCGACCTTGGTCGGGTCCTTTCCAGAGAAAGCACCACCACCGTGA
GCTCCCCAACCACCATAGGTGTCAATGATAATCTTCCTGCCAGTGAGACCAGCATCACCATGAGGTCCACCAATGACAAAGCGACCGGATGGGTTCAGAT
GGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTCAGGTCAGCAGCAATCTCATCATTGGTGACAGTCTCGTC
ATGCTGGGTAGAGATGAGGACAGTGTGGACACGAACTGGGACCATAGCACCACCCTCATTGCGGTACTCAACAGTCACCTGGGTCTTTCCATCAGGCCTG
AGCCAGGGGCA