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Detailed information on CNT30477100


BLAST search results

BLAST vs Swiss-Prot:
sp|P23686|METK1_ARATH, E-value = 1e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Arabidopsis halleriSetaria viridis97.9749.9480.1387forward
CNT30521359Arabidopsis halleriSetaria italica43.826.2584.97173forward
CNT30639623Arabidopsis halleriNymphaea colorata32.4124.5785.94128forward
CNT30549537Arabidopsis halleriIpomoea triloba57.4734.0884.14227forward
CNT30698521Arabidopsis halleriQuercus lobata64.345.2880.31254forward
CNT30372626Arabidopsis halleriArabidopsis thaliana75.9546.898300forward
CNT30266729Arabidopsis halleriChenopodium quinoa27.858.5387.27110forward
CNT3021108Arabidopsis halleriCitrullus lanatus41.019.8482.1162forward
CNT30729630Arabidopsis halleriCorchorus capsularis64.331.0179.53254forward
CNT30381493Arabidopsis halleriManihot esculenta20.5110.8187.6581forward
CNT30402638Arabidopsis halleriBeta vulgaris44.313.6682.86175forward
CNT30524807Arabidopsis halleriPhaseolus vulgaris33.1614.8584.73131forward
CNT30628634Arabidopsis halleriVigna unguiculata41.5222.7882.32164forward
CNT30194995Arabidopsis halleriPisum sativum40.5116.8185.62160forward
CNT30490001Arabidopsis halleriOlea europaea20.5116.3383.9581forward
CNT30711739Arabidopsis halleriGlycine max25.068.2785.8699forward
CNT3047442Arabidopsis halleriPrunus dulcis26.3317.1684.62104forward
CNT30158121Arabidopsis halleriPistacia vera24.0515.285.2695forward
CNT30190429Arabidopsis halleriSecale cereale30.6325.4787.6121forward
CNT30294498Arabidopsis halleriTriticum aestivum35.9517.7784.51142forward
CNT30225566Arabidopsis halleriHordeum vulgare37.9743.8685.33150forward
CNT30389985Arabidopsis halleriTriticum turgidum35.9513.9683.8142forward
CNT30561874Arabidopsis halleriActinidia chinensis71.932.278.52284forward
CNT30508545Arabidopsis halleriSolanum lycopersicum26.3325.1285.58104forward
CNT30172560Arabidopsis halleriTrifolium pratense23.2913.5184.7892forward
CNT30144304Arabidopsis halleriMedicago truncatula42.7826.2883.43169forward
CNT30437887Arabidopsis halleriAegilops tauschii35.9520.2984.51142forward
CNT30667060Arabidopsis halleriTriticum dicoccoides37.9723.6286150forward
CNT3059692Arabidopsis halleriArabidopsis lyrata22.7831.1498.8990forward
CNT30471290Arabidopsis halleriSaccharum spontaneum34.9415.3786.23138forward
CNT3014998Arabidopsis halleriZea mays28.6120.485.84113forward
CNT30606743Arabidopsis halleriGossypium raimondii65.0624.0680.93257forward
CNT30218287Arabidopsis halleriKalanchoe fedtschenkoi30.8923.5188.52122forward
CNT30650282Arabidopsis halleriRosa chinensis61.2720.5479.75242forward
CNT30626924Arabidopsis halleriDaucus carota24.817.7786.7398forward
CNT30686069Arabidopsis halleriTriticum urartu37.9717.6386.67150forward
CNT30349162Arabidopsis halleriEragrostis tef34.9415.1585.51138forward
CNT30368062Arabidopsis halleriSorghum bicolor35.4412.7485140forward
CNT30620812Arabidopsis halleriCajanus cajan20.516.5286.4281forward
CNT30597069Arabidopsis halleriOryza meridionalis31.96.388.1126forward
CNT30358838Arabidopsis halleriLactuca sativa63.5436.782.47251forward
CNT30432398Arabidopsis halleriPapaver somniferum25.068.1586.8799forward
CNT30571189Arabidopsis halleriVitis vinifera26.3316.8886.54104forward
CNT3055182Arabidopsis halleriAmborella trichopoda57.4721.4881.94227forward
CNT3025891Arabidopsis halleriPopulus trichocarpa62.0331.4579.59245forward
CNT3035650Arabidopsis halleriCucumis melo44.312.9885.71175forward
CNT30331991Arabidopsis halleriDioscorea rotundata32.4127.0682.81128forward
CNT30148817Arabidopsis halleriBrachypodium distachyon23.297.9686.9692forward
CNT30101941Arabidopsis halleriOryza rufipogon27.8513.1788.18110forward
CNT30496713Arabidopsis halleriDigitaria exilis54.4314.2881.4215forward
CNT30116702Arabidopsis halleriOryza nivara46.3317.8280.33183forward
CNT30113329Arabidopsis halleriFicus carica25.069.1986.8799forward
CNT30725315Arabidopsis halleriLupinus angustifolius42.2816.684.43167forward

Expression of CNT30477100

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LSGLTTSQVKSGSSLPKCPYAAVFKNLPFPPLFSISLSGIKPVS*

>peptide 2 (33 aa)
LEWLDDFPGEVRVVSSEVSVRRSFQEPSVSSSL*

Sequence

>CNT30477100
CTTGAGTGGCTTGACGACTTCCCAGGTGAAGTCAGGGTCGTCTCTTCCGAAGTGTCCGTACGCCGCAGTTTTCAAGAACCTTCCGTTTCCTCCTCTCTTT
AGTATCTCCTTGTCTGGAATCAAACCAGTCTCGTAAGTGTCCACAAAGACAGACAATGGCTCAGGGACTCCAATGGCGTATGAGACCTGAACAAGAGCCC
TACGAGCCATCCCGTTAGCCACAACGCTCTTAGCTGCTTGTCTCACAATGTAGGCTCCGCTTCTGTCGACCTTGGTTGGGTCTTTGCCAGAGAATGCACC
GCCTCCGTGAGCTCCCCATCCACCGTAGGTGTCAATGATGATCTTACGCCCGGTGAGACCAGCGTCTCCATGGGGTCCACCGATGACGAATCGGC