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Detailed information on CNT30729630

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LDQ7|METK_CAMSI, E-value = 2e-104

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-121

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672380	Corchorus capsularis	Setaria viridis	50.06	51.64	83.17	410	forward
CNT30520816	Corchorus capsularis	Setaria italica	50.06	47.45	82.93	410	forward
CNT30641080	Corchorus capsularis	Nymphaea colorata	21.12	19.33	86.13	173	forward
CNT30549537	Corchorus capsularis	Ipomoea triloba	49.45	60.81	84.2	405	forward
CNT30698521	Corchorus capsularis	Quercus lobata	32.72	47.77	88.06	268	forward
CNT30373104	Corchorus capsularis	Arabidopsis thaliana	46.76	45.65	80.42	383	forward
CNT30618114	Corchorus capsularis	Sesamum indicum	27.35	49.56	85.27	224	forward
CNT3021108	Corchorus capsularis	Citrullus lanatus	37.61	18.71	85.71	308	forward
CNT30381460	Corchorus capsularis	Manihot esculenta	46.03	41.02	84.88	377	forward
CNT30402638	Corchorus capsularis	Beta vulgaris	42.74	27.32	83.71	350	forward
CNT30628391	Corchorus capsularis	Vigna unguiculata	61.17	43.68	80.84	501	forward
CNT30194995	Corchorus capsularis	Pisum sativum	24.79	21.32	82.76	203	forward
CNT3047442	Corchorus capsularis	Prunus dulcis	28.82	38.94	85.59	236	forward
CNT30158121	Corchorus capsularis	Pistacia vera	22.22	29.12	88.46	182	forward
CNT3096210	Corchorus capsularis	Solanum tuberosum	22.22	29.26	82.97	182	forward
CNT30181754	Corchorus capsularis	Secale cereale	33.58	43.72	84	275	forward
CNT30294498	Corchorus capsularis	Triticum aestivum	50.06	51.31	82.2	410	forward
CNT30225924	Corchorus capsularis	Hordeum vulgare	29.91	43.52	86.12	245	forward
CNT30389985	Corchorus capsularis	Triticum turgidum	48.96	39.43	82.54	401	forward
CNT30561874	Corchorus capsularis	Actinidia chinensis	54.95	51.02	84.89	450	forward
CNT30508528	Corchorus capsularis	Solanum lycopersicum	27.47	43.35	84.44	225	forward
CNT30174161	Corchorus capsularis	Trifolium pratense	25.52	26.49	82.78	209	forward
CNT30144304	Corchorus capsularis	Medicago truncatula	29.43	37.48	82.16	241	forward
CNT30437887	Corchorus capsularis	Aegilops tauschii	45.3	53	82.21	371	forward
CNT30667060	Corchorus capsularis	Triticum dicoccoides	18.56	23.94	86.84	152	forward
CNT30471290	Corchorus capsularis	Saccharum spontaneum	50.06	45.66	81.95	410	forward
CNT3014998	Corchorus capsularis	Zea mays	17.46	25.81	83.22	143	forward
CNT30624603	Corchorus capsularis	Daucus carota	28.45	35.3	84.98	233	forward
CNT30681758	Corchorus capsularis	Triticum urartu	42	50.44	83.14	344	forward
CNT30349162	Corchorus capsularis	Eragrostis tef	32.48	29.2	86.84	266	forward
CNT30477100	Corchorus capsularis	Arabidopsis halleri	31.01	64.3	79.53	254	forward
CNT30368062	Corchorus capsularis	Sorghum bicolor	45.67	34.03	81.55	374	forward
CNT30620812	Corchorus capsularis	Cajanus cajan	35.41	23.35	80.69	290	forward
CNT30597069	Corchorus capsularis	Oryza meridionalis	50.06	20.49	81.71	410	forward
CNT30358838	Corchorus capsularis	Lactuca sativa	29.91	35.82	85.31	245	forward
CNT3055182	Corchorus capsularis	Amborella trichopoda	46.4	35.95	81.05	380	forward
CNT3022562	Corchorus capsularis	Populus trichocarpa	49.33	25.83	85.4	404	forward
CNT3035650	Corchorus capsularis	Cucumis melo	37.61	22.85	86.04	308	forward
CNT30331991	Corchorus capsularis	Dioscorea rotundata	28.21	48.84	82.25	231	forward
CNT30101941	Corchorus capsularis	Oryza rufipogon	38.71	37.96	81.07	317	forward
CNT30113343	Corchorus capsularis	Ficus carica	13.43	31.07	83.64	110	forward
CNT30725315	Corchorus capsularis	Lupinus angustifolius	61.17	49.8	81.04	501	forward

Expression of CNT30729630

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MEKSYKNNDEKKIGGNTTNNKTLLGEQQQPGTNTLFMIQQVKSVLVLRFLPLEGQDHLYQSVHMQPS*

>peptide 2 (36 aa)
MCQQTQTMVQAHQLHTRPGLYTYEQDHLQQCSWQPA*

>peptide 3 (66 aa)
MAIIPGLKSKFSLTIFKISLSGIFPVPYVSTNTDNGSGTPIAYETWTIHLRARPFATMLLAACLTM*

>peptide 4 (35 aa)
LRHKRSKTNAFNTKKCCPAADLLLQSLGFKHMRYI*

>peptide 5 (30 aa)
MSSPTTICVDDDFAASETCITMRTPYDKTP*

>peptide 6 (29 aa)
MMKKRLGETQQTTRRYLESSSSQGQTHYS*

>peptide 7 (28 aa)
MTKRPDGLRWKMVLSSRYFSGITGLMTCS

Sequence

>CNT30729630
ACTCAGGCATAAGAGAAGCAAAACAAATGCATTCAATACAAAAAAATGCTGCCCTGCAGCTGACCTTCTCTTGCAATCCCTAGGTTTTAAGCACATGAGG
TATATATAGGTGACAAGGCTGCTGCTCTCTATTCATGTATATAGTCTTTTAATTATAAATGGAAAAATCGTATAAAAACAATGATGAAAAAAAGATTGGG
GGAAACACAACAAACAACAAGACGTTACTTGGAGAGCAGCAGCAGCCAGGGACAAACACATTATTCATGATCCAACAAGTCAAGAGTGTGTTAGTTTTGA
GGTTTCTCCCACTTGAGGGTCAGGATCATCTCTACCAAAGTGTCCATATGCAGCCGTCTTGAGGAACCTGCCATTGCCACCCCTCTTAAGATCCAAGTTA
ATGGCTATCATACCGGGCCTAAAGTCAAAGTTTTCCTTGACAATCTTCAAAATTTCCTTGTCTGGTATCTTTCCAGTCCCATATGTGTCAACAAACACAG
ACAATGGTTCAGGCACACCAATTGCATACGAGACCTGGACTATACACCTACGAGCAAGACCATTTGCAACAATGCTCTTGGCAGCCTGCCTAACAATGTA
GGCACCACTTCTGTCCACCTTAGTAGGGTCCTTTCCGGAGAAGGCACCACCGCCATGAGCTCCCCAACCACCATATGTGTCGATGATGATTTTGCGGCCA
GTGAGACCTGCATCACCATGAGGACCCCCTATGACAAAACGCCCTGATGGGTTGAGATGGAAGATGGTCTTGTCGTCAAGGTACTTTTCGGGGATAACTG
GCTTGATGACGTGCTCTTT