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Detailed information on CNT30496713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 6e-87

BLAST vs NONCODE:
NONPOPT000587, E-value = 7e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Digitaria exilisSetaria viridis30.1557.1893.83454forward
CNT30521184Digitaria exilisSetaria italica38.6525.3292.1582forward
CNT30641080Digitaria exilisNymphaea colorata20.6534.7583.92311forward
CNT30549537Digitaria exilisIpomoea triloba29.2866.2280.73441forward
CNT30698521Digitaria exilisQuercus lobata14.5439.0485.39219forward
CNT30372626Digitaria exilisArabidopsis thaliana29.0268.1779.86437forward
CNT30618114Digitaria exilisSesamum indicum15.0750.2281.5227forward
CNT30266729Digitaria exilisChenopodium quinoa29.6134.682.96446forward
CNT3021108Digitaria exilisCitrullus lanatus20.0518.3581.79302forward
CNT30729048Digitaria exilisCorchorus capsularis18.5942.6882.5280forward
CNT30381493Digitaria exilisManihot esculenta12.3524.8384.95186forward
CNT30402638Digitaria exilisBeta vulgaris17.3320.3782.76261forward
CNT30524774Digitaria exilisPhaseolus vulgaris11.2923.4582.35170forward
CNT30628391Digitaria exilisVigna unguiculata29.4238.6280.14443forward
CNT30490001Digitaria exilisOlea europaea7.923.9984.03119forward
CNT30708643Digitaria exilisGlycine max18.1949.3781.02274forward
CNT3047443Digitaria exilisPrunus dulcis16.0720.2879.34242forward
CNT30638840Digitaria exilisCapsicum annuum12.3521.7880.65186forward
CNT30189384Digitaria exilisSecale cereale29.4856.4983.33444forward
CNT30301451Digitaria exilisTriticum aestivum21.9892.4687.92331forward
CNT30225924Digitaria exilisHordeum vulgare22.8461.185.76344forward
CNT30389985Digitaria exilisTriticum turgidum20.6530.5887.14311forward
CNT30561874Digitaria exilisActinidia chinensis20.9235.7181.27315forward
CNT30508545Digitaria exilisSolanum lycopersicum9.333.8283.57140forward
CNT30172560Digitaria exilisTrifolium pratense20.9246.2680.32315forward
CNT30146819Digitaria exilisMedicago truncatula11.1622.3782.14168forward
CNT30437887Digitaria exilisAegilops tauschii20.6544.4387.46311forward
CNT30667060Digitaria exilisTriticum dicoccoides22.9154.3386.96345forward
CNT3059692Digitaria exilisArabidopsis lyrata4.7124.5788.7371forward
CNT30471290Digitaria exilisSaccharum spontaneum30.1550.5693.83454forward
CNT3014998Digitaria exilisZea mays17.9948.9290.77271forward
CNT30608385Digitaria exilisGossypium raimondii24.6367.4582.21371forward
CNT30218287Digitaria exilisKalanchoe fedtschenkoi20.0558.1983.11302forward
CNT3066706Digitaria exilisLeersia perrieri13.8861.4785.17209forward
CNT30650282Digitaria exilisRosa chinensis27.6935.485.13417forward
CNT30686069Digitaria exilisTriticum urartu21.8538.6686.63329forward
CNT30349162Digitaria exilisEragrostis tef13.9423.0592.38210forward
CNT30477100Digitaria exilisArabidopsis halleri14.2854.4381.4215forward
CNT30367696Digitaria exilisSorghum bicolor30.1552.7992.73454forward
CNT30620815Digitaria exilisCajanus cajan16.1433.2479.42243forward
CNT30597069Digitaria exilisOryza meridionalis22.6417.0492.38341forward
CNT30432398Digitaria exilisPapaver somniferum28.6935.5880.79432forward
CNT30570674Digitaria exilisVitis vinifera16.1425.7481.48243forward
CNT3055182Digitaria exilisAmborella trichopoda21.9831.3280.66331forward
CNT3025891Digitaria exilisPopulus trichocarpa20.6539.9282.96311forward
CNT30331991Digitaria exilisDioscorea rotundata15.3448.8483.12231forward
CNT30148817Digitaria exilisBrachypodium distachyon17.9923.4483.03271forward
CNT30101941Digitaria exilisOryza rufipogon28.6951.7491.9432forward
CNT30574675Digitaria exilisOryza barthii12.1540.5883.61183forward
CNT30116792Digitaria exilisOryza nivara9.6922.7194.52146forward
CNT30594307Digitaria exilisEragrostis curvula5.1822.2296.1578forward
CNT30551132Digitaria exilisOryza brachyantha7.127.7296.26107forward
CNT30725315Digitaria exilisLupinus angustifolius22.1133.181.98333forward

Expression of CNT30496713

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVKASSSSAFFNRSEERSLRNSKATRAGCLAKSVL*

>peptide 2 (44 aa)
MARRARPLATMLFAACLATYAPLRSTLVGSLPEKAPPPWAPQPP*

>peptide 3 (41 aa)
MIMPGLKSKFSFTILRISLSGIVPVPYVSTNTESGSGTPMA*

>peptide 4 (78 aa)
MQMVSRRQQCRTNGSGKVRIIVNQTNCMIDKIDIGSLLCTRAITKQFWKCSCSTLTNLDYQQALYSFLARIFYQNLSY*

Sequence

>CNT30496713
GCCTGTAGCTTCATTCTTTGGTTCACCATTACATTAAGTAGCAAAACCAGAAATAGCAGACAATAAATCTTCCTCTAGGTAAATAACCAGACACAGTAAT
ACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCACAGGGCAGATCAAGAATCACAATATAGAAGCCACAAAACATGATAAGCGTGG
CAGAAGGCTTCTCCCACTTGAGGGGCTTCACAACCTCCCAGGTGAAGTCTGGGTCGTCCCTTCCAAAGTGACCGTAGGCCGCTGTCTTCAGGTAACGCCC
GTTGCCGCCTTTCTTGAGGTCAAGGTTGATAATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCGGGGATCGTG
CCAGTGCCGTACGTGTCGACAAACACGGAGAGCGGCTCAGGCACACCAATGGCGTAGGAGACCTGGACAATGGCGCGGCGAGCAAGGCCGTTAGCGACGA
TGCTCTTCGCAGCCTGCCTTGCAACGTACGCTCCACTGCGGTCGACCTTGGTAGGGTCCTTGCCAGAGAAGGCGCCACCACCGTGGGCTCCCCAGCCACC
ATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTGAAGAGGAAGGTGTCAACTGCGGCCATCTTCTCTGATCTGCAGCAGAT
AATGCAAATGGTTAGTCGAAGACAACAGTGTAGAACAAATGGCTCAGGCAAAGTAAGAATAATTGTGAACCAAACAAATTGCATGATTGATAAGATCGAT
ATTGGTTCCCTCCTATGTACAAGAGCAATAACTAAACAGTTTTGGAAATGTTCTTGTAGCACACTGACAAATCTGGATTACCAGCAAGCACTGTACTCCT
TTTTGGCAAGAATATTTTACCAAAATTTGTCTTATTAAGCATGCAGTAAAAGAAAAAAAAAAGGAACTTTAGACTAATAAACAGGCACAAAAAGGCAATC
TTTGTATCTTATGACTGGGTTTTGTTGGCACATAACAAGACTGCATACTTGAGGCCAAGATATCCGCCTTGCAAAGTCAACTATTCGTCCAATAAAAATT
TGGCATTTCTGATTCGCTCAGATAAGAGTACACTCTGTATGTGCGGCTAGTGGGCAGAGGCACAAGGAATCTACCAAGTGTCTAGCAGAATCAGCATAAG
AATCGTGAAATGAGATCCTAGGAACAAAATAATGAACCAAATATGCTTCCACTAGTAGGATGACAAAAGTATTCTCCACGGTGAACACCACGGAACATGG
TAAAAGCAAGCAGTAGCTCAGCGTTTTTTAACAGATCAGAGGAAAGAAGCCTCAGAAATTCTAAAGCAACACGTGCAGGTTGCCTAGCAAAAAGTGTTCT
CTAGATCATCACAAGAGAACAAAGCTAACAAAAAAATGATTATTTTTCCTAACCATTTTAGAAGATGATGAATCAGCATCACTATCATTTCAGCACTAAC
CTTCGC