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Detailed information on CNT30620812


BLAST search results

BLAST vs Swiss-Prot:
sp|A4ULF8|METK_MEDSF, E-value = 2e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Cajanus cajanSetaria viridis28.536.3480.79354forward
CNT30521128Cajanus cajanSetaria italica21.135.7982.06262forward
CNT30641080Cajanus cajanNymphaea colorata28.6639.7880.34356forward
CNT30549537Cajanus cajanIpomoea triloba25.24784.98313forward
CNT30515028Cajanus cajanJuglans regia23.5934.5182.94293forward
CNT30372626Cajanus cajanArabidopsis thaliana19.2437.2981.17239forward
CNT30618114Cajanus cajanSesamum indicum14.0938.7280.57175forward
CNT30729630Cajanus cajanCorchorus capsularis23.3535.4180.69290forward
CNT30402638Cajanus cajanBeta vulgaris30.3529.4382.49377forward
CNT30524807Cajanus cajanPhaseolus vulgaris25.9336.5184.47322forward
CNT30628558Cajanus cajanVigna unguiculata25.9338.4284.16322forward
CNT30490001Cajanus cajanOlea europaea20.6951.8185.99257forward
CNT30712018Cajanus cajanGlycine max27.2163.6585.5338forward
CNT3047443Cajanus cajanPrunus dulcis26.5727.6688.18330forward
CNT30158121Cajanus cajanPistacia vera34.5468.6479.95429forward
CNT30638840Cajanus cajanCapsicum annuum26.1738.0679.69325forward
CNT3090332Cajanus cajanSolanum tuberosum14.9828.6282.8186forward
CNT30225701Cajanus cajanHordeum vulgare16.2639.6979.7202forward
CNT30561874Cajanus cajanActinidia chinensis18.9226.6485.53235forward
CNT3086464Cajanus cajanVigna radiata8.135089.11101forward
CNT30508528Cajanus cajanSolanum lycopersicum20.3748.7580.24253forward
CNT30174161Cajanus cajanTrifolium pratense19.1630.1683.19238forward
CNT30667060Cajanus cajanTriticum dicoccoides16.2631.8180.2202forward
CNT3059692Cajanus cajanArabidopsis lyrata6.9229.7686.0586forward
CNT3082721Cajanus cajanBrassica juncea15.8668.1781.73197forward
CNT30471855Cajanus cajanSaccharum spontaneum25.5234.4678.55317forward
CNT30606743Cajanus cajanGossypium raimondii25.9330.1582.3322forward
CNT30218668Cajanus cajanKalanchoe fedtschenkoi13.6143.6783.43169forward
CNT3066706Cajanus cajanLeersia perrieri15.5456.7680.31193forward
CNT30650282Cajanus cajanRosa chinensis26.4927.9380.55329forward
CNT30212612Cajanus cajanHelianthus annuus10.0651.8782.4125forward
CNT30626924Cajanus cajanDaucus carota22.8722.5283.1284forward
CNT30686785Cajanus cajanTriticum urartu23.1128.4280.84287forward
CNT30344080Cajanus cajanEragrostis tef6.0426.049275reverse complement
CNT30477100Cajanus cajanArabidopsis halleri6.5220.5186.4281forward
CNT30368076Cajanus cajanSorghum bicolor22.9526.1779.3285forward
CNT30597163Cajanus cajanOryza meridionalis14.4930.379.44180forward
CNT30432398Cajanus cajanPapaver somniferum25.626.1981.45318forward
CNT30570674Cajanus cajanVitis vinifera25.853486.6321forward
CNT3024331Cajanus cajanPopulus trichocarpa25.630.4985.53318forward
CNT3036529Cajanus cajanCucumis melo10.9531.783.82136forward
CNT30331991Cajanus cajanDioscorea rotundata9.7425.5882.64121forward
CNT30101681Cajanus cajanOryza rufipogon25.1212.1878.53312forward
CNT30174554Cajanus cajanVigna angularis38.8967.2788.61483forward
CNT30551132Cajanus cajanOryza brachyantha7.8125.1383.5197forward
CNT30725315Cajanus cajanLupinus angustifolius26.4132.688.11328forward

Expression of CNT30620812

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ACEFIERSIAMKTFELNTMISRHALVLCIQTETTLFYSIM*

>peptide 2 (43 aa)
MFHMRPCCLSPVQDTRRGQRRRFGRRACRGVPRSQTRRCIGKSL

>peptide 3 (31 aa)
MSTPTTIGITGLITCSFRSEAISSFVTVSSC*

>peptide 4 (38 aa)
MSGLCCSMFTRTLQLSASSPTSSETKPIFLQVSRTIFS*

Sequence

>CNT30620812
ATGCATGTGAGTTCATCGAAAGAAGCATTGCAATGAAAACATTTGAATTGAATACTATGATATCAAGGCATGCATTGGTGTTATGCATACAAACTGAGAC
CACGTTATTTTACTCGATCATGTAATAAAAAATTACAAATGTAAAAGAACATAGAAGAAACAAAATAGTAAGAGGGGGTGAGAAACACACAGAACAAGAG
ACGAGGACAGTGTTGATCGAATATTTAGACAGATAAGGGCAAGCTCAAAAAACTCAAATTTCTTATGCCTTCTCCCACTTGAGAGTCTTGACCACTTCCC
AAGTGAAGTCAGGGTCCTCTCTGCCAAAGTGTCCATAAGCAGCAGTCTTCAAGAACCTGTTGTTGCCACCCCTCTTGAGATCAAGGTTGATAGAAATCAT
CCCAGGCCTGAAATCAAAATTCTCCTTCACAATGCTGAGAATCTCCTTATCAGGAATCTTCCCAGTGCCATAAGTATCAACAAACACAGACAAAGGCTCA
GGCACCCCAATAGCATAAGAAACTTGCACAATGCACCTCCTTGCAAGTCCACTGGCCACAATGCTCTTAGCAGCTTGCCTCACAATGTAGGCACCACCAC
CATGAGCACCCCAACCACCATAGGGATCACAGGCTTGATCACGTGCTCCTTCAGATCAGAAGCAATTTCATCGTTCGTCACAGTCTCATCATGTTGAGTT
GAAATCAACACGGTGTGGACACGAACAGGAACCATTGCACCCTTGTCATTGTAATACTCAACAGTCACTTGGGTCTTCCCATCAGGTCTCAGCCAAGGGC
ATGTCCCATTCTTCCGAACCTCGGTGAGTTTGGCACCGAGTTTGGTCGCCAGGACGTGACTCAGTGGCATCAATTCCGGGGTTTCATCGGTGGCGTAGCC
GAACATGTGACCCTGGTCGCCGGCGCCGATTTCCTCAGGGCGTTTGGTGAGGTGGCCGTGCACGCCTTGAGCGATGTCGGGGCTCTGCTGCTCGATGTTC
ACGAGGACTTTGCAGTTGTCGGCGTCGAGTCCCACATCGTCTGAGACGAAGCCGATTTTCCTGCAGGTGTCGCGCACGATCTTCTCGTAGTCAACGTTGG
TCTTGGTGCATGTTTCACATGCGACCTTGCTGTCTGAGTCCTGTTCAAGACACGCGTCGAGGACAGCGTCGGAGATTTGGTCGCAGAGCTTGTCGGGGTG
TCCCTCGTTCACAGACTCGGAGGTGTATAGGAAAGTCTCTGC