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Detailed information on CNT30667060


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB22|METK3_HORVU, E-value = 2e-118

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Triticum dicoccoidesSetaria viridis59.6947.7385.22379forward
CNT30522677Triticum dicoccoidesSetaria italica54.3338.988.99345forward
CNT30641080Triticum dicoccoidesNymphaea colorata37.826.8284.17240forward
CNT30549537Triticum dicoccoidesIpomoea triloba52.650.1581.44334forward
CNT30698521Triticum dicoccoidesQuercus lobata37.1742.0781.78236forward
CNT30372626Triticum dicoccoidesArabidopsis thaliana25.5125.2784.57162forward
CNT30618114Triticum dicoccoidesSesamum indicum33.3946.981.13212forward
CNT30266729Triticum dicoccoidesChenopodium quinoa49.9224.5984.86317forward
CNT3021108Triticum dicoccoidesCitrullus lanatus53.5420.6681.18340forward
CNT30729630Triticum dicoccoidesCorchorus capsularis23.9418.5686.84152forward
CNT30194995Triticum dicoccoidesPisum sativum25.5117.0284.57162forward
CNT30490001Triticum dicoccoidesOlea europaea18.7423.9981.51119forward
CNT30638840Triticum dicoccoidesCapsicum annuum34.3325.5380.73218forward
CNT30190429Triticum dicoccoidesSecale cereale42.0556.2197.38267forward
CNT30303722Triticum dicoccoidesTriticum aestivum48.550.8396.43308forward
CNT30225924Triticum dicoccoidesHordeum vulgare62.270.1694.43395forward
CNT30561874Triticum dicoccoidesActinidia chinensis55.5940.0279.04353forward
CNT30508528Triticum dicoccoidesSolanum lycopersicum29.1335.6581.08185forward
CNT30146819Triticum dicoccoidesMedicago truncatula25.0421.1781.76159forward
CNT30441436Triticum dicoccoidesAegilops tauschii4050.195.28254forward
CNT30471290Triticum dicoccoidesSaccharum spontaneum59.6942.285.75379forward
CNT3014998Triticum dicoccoidesZea mays42.5248.7485.19270forward
CNT30608385Triticum dicoccoidesGossypium raimondii60.1669.4581.15382forward
CNT30218287Triticum dicoccoidesKalanchoe fedtschenkoi47.5658.1982.45302forward
CNT3066706Triticum dicoccoidesLeersia perrieri32.9161.4786.12209forward
CNT30650282Triticum dicoccoidesRosa chinensis48.9826.482.96311forward
CNT30686961Triticum dicoccoidesTriticum urartu49.7636.45100316forward
CNT30349162Triticum dicoccoidesEragrostis tef29.1320.3187.03185forward
CNT30477100Triticum dicoccoidesArabidopsis halleri23.6237.9786150forward
CNT30363315Triticum dicoccoidesSorghum bicolor54.3341.5788.7345forward
CNT30620812Triticum dicoccoidesCajanus cajan31.8116.2680.2202forward
CNT30597069Triticum dicoccoidesOryza meridionalis56.5417.9486.63359forward
CNT30355133Triticum dicoccoidesLactuca sativa28.6620.880.77182forward
CNT30420528Triticum dicoccoidesPapaver somniferum28.59.583.43181forward
CNT3055182Triticum dicoccoidesAmborella trichopoda28.9817.4183.7184forward
CNT3025891Triticum dicoccoidesPopulus trichocarpa54.4944.4281.5346forward
CNT3035650Triticum dicoccoidesCucumis melo47.2422.2682.33300forward
CNT30331991Triticum dicoccoidesDioscorea rotundata20.1627.0685.94128forward
CNT30148817Triticum dicoccoidesBrachypodium distachyon39.3721.6391.2250forward
CNT30101941Triticum dicoccoidesOryza rufipogon55.1241.9285.43350forward
CNT30574675Triticum dicoccoidesOryza barthii27.5638.886.29175forward
CNT30496713Triticum dicoccoidesDigitaria exilis54.3322.9186.96345forward
CNT30551132Triticum dicoccoidesOryza brachyantha14.0223.0689.8989forward
CNT30725315Triticum dicoccoidesLupinus angustifolius55.1234.7978.86350forward

Expression of CNT30667060

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VLMNLFPPFFKSRLMLIIPGLKSKFSFTSLRISLSGILPVP*

>peptide 2 (56 aa)
LDEPVSTFLQVQVDADHPRPEVKVLLHELEDLPVGDLAGAVGVDEHRQGLRHPNGV*

>peptide 3 (56 aa)
MTKRPDGFRYSMVTWVFPSGLSQAQVPFLRTSVRRAPSLVASMWVRGISSGVSSVA*

Sequence

>CNT30667060
GTCTTGATGAACCTGTTTCCACCTTTCTTCAAGTCCAGGTTGATGCTGATCATCCCAGGCCTGAAGTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCC
TGTCGGGGATCTTGCCGGTGCCGTAGGAGTCGACGAACACAGACAGGGGCTCAGGCACCCCAATGGCGTATGAGATCTGCACAATGCAGCGGCGTGCGAG
ACCACTGGCGATGATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCACCACTGCGGTCGACCTTGGTCGGGTCCTTGCCAGAGAAGGCGCCGCCGCCGTGG
GCTCCCCAGCCACCGTAGGTGTCGATGATGATCTTGCGGCCGGTGAGACCGGCATCACCGTGAGGTCCGCCGATGACGAAGCGGCCAGACGGGTTCAGGT
ACTCAATGGTGACCTGGGTCTTTCCGTCAGGCCTGAGCCAGGCGCAGGTGCCATTCTTGCGGACCTCGGTAAGGCGAGCTCCAAGCTTGGTGGCGAGCAT
GTGGGTGAGGGGCATCAGCTCAGGAGTCTCATCGGTGGCGTAGCCGAACATGATGCCCTGGTCACCGGCACCGATCTCTTCAGGGCGCTTGGTGAAGTGT
CCGTGAACACCCTGGGCAATGTCAGGGGATTGCTG