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Detailed information on CNT30471855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 3e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Saccharum spontaneumSetaria viridis48.9146.294.89450forward
CNT30515028Saccharum spontaneumJuglans regia31.5234.1682.41290forward
CNT30374815Saccharum spontaneumArabidopsis thaliana28.2662.9581.54260forward
CNT30266655Saccharum spontaneumChenopodium quinoa5040.9386.96460forward
CNT30194995Saccharum spontaneumPisum sativum34.7833.6182.81320forward
CNT30495282Saccharum spontaneumOlea europaea43.9122.9481.93404forward
CNT30712013Saccharum spontaneumGlycine max40.6583.6782.09374forward
CNT3047443Saccharum spontaneumPrunus dulcis28.3721.8885.44261forward
CNT3090332Saccharum spontaneumSolanum tuberosum38.0453.8583.71350forward
CNT30181754Saccharum spontaneumSecale cereale30.4344.5288.21280forward
CNT30225130Saccharum spontaneumHordeum vulgare17.538.1586.34161forward
CNT3086110Saccharum spontaneumVigna radiata33.9127.9184.29312forward
CNT30508429Saccharum spontaneumSolanum lycopersicum13.751.0184.92126forward
CNT30174161Saccharum spontaneumTrifolium pratense40.3347.0281.67371forward
CNT30144438Saccharum spontaneumMedicago truncatula32.8361.7683.77302forward
CNT30662024Saccharum spontaneumTriticum dicoccoides21.0938.1989.18194forward
CNT30310308Saccharum spontaneumCamelina sativa18.4873.5983.53170forward
CNT3059692Saccharum spontaneumArabidopsis lyrata7.1722.8490.9166forward
CNT3082721Saccharum spontaneumBrassica juncea19.8963.3285.25183forward
CNT30650282Saccharum spontaneumRosa chinensis48.3737.7885.84445forward
CNT30344080Saccharum spontaneumEragrostis tef7.832588.8972reverse complement
CNT30368076Saccharum spontaneumSorghum bicolor44.4637.5697.56409forward
CNT30620812Saccharum spontaneumCajanus cajan34.4625.5278.55317forward
CNT30597062Saccharum spontaneumOryza meridionalis41.5234.7391.1382forward
CNT30429132Saccharum spontaneumPapaver somniferum47.527.5580.32437forward
CNT3055148Saccharum spontaneumAmborella trichopoda20.765.1385.34191forward
CNT3025933Saccharum spontaneumPopulus trichocarpa40.1152.8782.66369forward
CNT3035650Saccharum spontaneumCucumis melo41.5228.3486.13382forward
CNT30148817Saccharum spontaneumBrachypodium distachyon51.4140.9286.89473forward
CNT30101810Saccharum spontaneumOryza rufipogon53.2619.3391.43490forward
CNT30116854Saccharum spontaneumOryza nivara38.9114.5691.06358forward
CNT30594307Saccharum spontaneumEragrostis curvula9.1323.9392.8684forward
CNT30174424Saccharum spontaneumVigna angularis51.358.0682.63472forward
CNT30113343Saccharum spontaneumFicus carica19.7851.4189.01182forward

Expression of CNT30471855

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFTSTLQWSASSPTSADTKPMLRQVSLTIFS*

>peptide 2 (39 aa)
YITKMHEVPLLLKVAVACSFFHCFKHYISSKTRNNPLGN*

>peptide 3 (55 aa)
MTMLVLVQVSQATLLSGSSARQASRTASETWSQSLSGCPSFTDSEVKRKVSTAAIF

>peptide 4 (87 aa)
MMIMPGAGSILADLSEASTKLGGKDMAERHQLRGLISRIPKHVSLVTSSNLLGALGEVAMHTLSNIRRLLLNVHEHLAVVSVKPNIG*

>peptide 5 (74 aa)
MISAADQKLLLKKGALGRRLLRLEGLHHLPGEVRVVPSKVSVGRCLEVAPIAAFLEVKVDDDHARGRFHSCGPQ*

Sequence

>CNT30471855
TATATAACCAAAATGCACGAAGTCCCATTACTTCTCAAAGTAGCTGTAGCCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAAGCAGCAAAACCAGAA
ATAATCCTCTAGGTAATTAAGCAGACACAGTAAGACCCTCACAAGTACCACTTATTAGGACAGTACAAATACAAATGATAAGCAAGGGCAGATCAAGAAT
CACAACATATAGAAGCCATAATAAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTGAAAAAGGGCGCCTTAGGCAGAAGGCTTCTCCGCCTTGAGG
GGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCAAAGTGTCCGTAGGCCGCTGTCTTGAGGTAGCGCCCATTGCCGCCTTTCTTGAGGTCAA
GGTTGATGATGATCATGCCAGGGGCAGGTTCCATTCTTGCGGACCTCAGTGAGGCGAGCACCAAGCTTGGTGGCAAGGACATGGCTGAGAGGCATCAGCT
CAGGGGTCTCATCAGTCGCATACCCAAACATGTGTCCCTGGTCACCAGCTCCAATCTCCTCGGGGCGCTTGGTGAAGTGGCCATGCACACCCTGAGCAAT
ATCAGGAGACTGCTGCTCAATGTTCACGAGCACCTTGCAGTGGTCAGCGTCAAGCCCAACATCGGCTGACACGAAACCAATGTTGCGGCAGGTCTCCCTG
ACAATCTTCTCGTAGTCGACATTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTGGTCTTGGTGCAGGTCTCACAAGCAACCTTGCTGTCAG
GGTCCTCAGCAAGGCAAGCATCAAGAACGGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCGTTCACAGACTCCGAGGTGAAGAGGAAGGT
GTCAACTGCGGCCATCTTCT