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Detailed information on CNT30368076


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 3e-51

BLAST vs NONCODE:
NONATHT001922, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Sorghum bicolorSetaria viridis40.2244.9795.43438forward
CNT30520870Sorghum bicolorSetaria italica51.4282.3589.64560forward
CNT30266729Sorghum bicolorChenopodium quinoa56.3847.6384.85614forward
CNT30194995Sorghum bicolorPisum sativum26.5430.3682.01289forward
CNT30495282Sorghum bicolorOlea europaea33.5220.7381.64365forward
CNT30712013Sorghum bicolorGlycine max34.3483.6783.16374forward
CNT3090332Sorghum bicolorSolanum tuberosum31.5952.9284.01344forward
CNT30189384Sorghum bicolorSecale cereale37.9252.5485.23413forward
CNT3086110Sorghum bicolorVigna radiata26.6325.9484.14290forward
CNT30174161Sorghum bicolorTrifolium pratense33.1545.7581.16361forward
CNT30144438Sorghum bicolorMedicago truncatula26.5459.182.01289forward
CNT30471855Sorghum bicolorSaccharum spontaneum37.5644.4697.56409forward
CNT30650282Sorghum bicolorRosa chinensis37.5634.7285.82409forward
CNT30624603Sorghum bicolorDaucus carota24.0639.783.97262forward
CNT30620812Sorghum bicolorCajanus cajan26.1722.9579.3285forward
CNT30597062Sorghum bicolorOryza meridionalis32.4232.0992.07353forward
CNT30429132Sorghum bicolorPapaver somniferum36.8225.2881.55401forward
CNT3035650Sorghum bicolorCucumis melo34.3427.7486.63374forward
CNT30148817Sorghum bicolorBrachypodium distachyon37.3735.2186.49407forward
CNT30101810Sorghum bicolorOryza rufipogon37.115.9492.57404forward
CNT30116702Sorghum bicolorOryza nivara27.7329.4191.39302forward
CNT30174424Sorghum bicolorVigna angularis36.7349.283400forward

Expression of CNT30368076

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMIMPGLKSKFSFTILRISLSGIVPVPYVSTKTERGSGTPMA*

>peptide 2 (47 aa)
MTMLVLVQVSQATLLSGSSARQASRTASETWSQSLSGCRLRPSSLICS

>peptide 3 (31 aa)
MFTSTLQWSASSPTSADTKPMLRQVSLTIFS*

>peptide 4 (62 aa)
MAEGHQLRGLISGIPKHVSLVTSSNLLGALGEVAVHTLSNIRRLLLNVHKHLAVVSVKPDIS*

Sequence

>CNT30368076
CTCAAAGTGGCTGTAGCCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAACCAGTAAAACCAGAAATAATCCTCTAGGTAAATAAGCAGACACAATAA
GACCCTCACAAGTACCACTTATTAGGACAGTACAAGTACAAATGATAAGCAAGGGGCAGATCAAGAATCACAACATATAGAAGCCAGATAAAACATGATA
AAGCGCAGCAGACCAAAAGCTTCTTCTGAAAAAGTGAGGGTGCCTTAGGCAGAAGGCTTCTCCGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAG
GGCCGCCGTCTTGAGGTCGAGGTTGATGATGATCATGCCAGGCCTGAAGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAGGAATCGTGCCG
GTGCCATACGTGTCAACAAAGACGGAGAGAGGCTCAGGCACACCGATGGCGTAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCGTTGGCAACAATGC
TCTTGGCAGCCTGCCTTGCGATGTAGGCTCCACTGCGGTCGACCTTGGTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCCCAGCCACCATA
GGTGTCAATGATGATCTTCCGGCCAGTAAGACCAGCATCACCGTGAGTTTTGCACCAAGCTTGGTGGCAAGGACATGGCTGAGGGGCATCAGCTCAGGGG
TCTCATCAGTGGCATACCCAAACATGTGTCCCTGGTCACCAGCTCCAATCTCCTCGGGGCGCTTGGTGAAGTGGCCGTGCACACCCTGAGCAATATCAGG
AGACTGCTGCTCAATGTTCACAAGCACCTTGCAGTGGTCAGCGTCAAGCCCGACATCAGCTGACACGAAACCAATGTTGCGGCAGGTCTCCCTGACAATC
TTCTCGTAGTCGACATTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTGGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCAGGGTCCT
CAGCAAGGCAAGCGTCAAGAACAGCATCTGAGACCTGGTCGCAGAGCTTGTCTGGGTGTCGACTGCGGCCATCTTCTCTGATCTGCAGC