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Detailed information on CNT3055182


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBQ7|METK3_PETHY, E-value = 3e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Amborella trichopodaSetaria viridis39.9253.1581.99422forward
CNT30520816Amborella trichopodaSetaria italica39.9248.8481.75422forward
CNT30641111Amborella trichopodaNymphaea colorata20.3422.0184.19215forward
CNT30549537Amborella trichopodaIpomoea triloba31.4149.8581.02332forward
CNT30698521Amborella trichopodaQuercus lobata19.8737.4381.9210forward
CNT30373104Amborella trichopodaArabidopsis thaliana39.0749.2380.63413forward
CNT30266729Amborella trichopodaChenopodium quinoa30.8425.2980.06326forward
CNT30729630Amborella trichopodaCorchorus capsularis35.9546.481.05380forward
CNT30524807Amborella trichopodaPhaseolus vulgaris20.4424.4982.87216forward
CNT30628391Amborella trichopodaVigna unguiculata40.0236.8880.38423forward
CNT30158121Amborella trichopodaPistacia vera16.9328.6485.47179forward
CNT30294498Amborella trichopodaTriticum aestivum39.4552.1980.34417forward
CNT30225924Amborella trichopodaHordeum vulgare23.5644.2384.74249forward
CNT30561874Amborella trichopodaActinidia chinensis40.1148.0780.9424forward
CNT30146819Amborella trichopodaMedicago truncatula19.4927.4382.52206forward
CNT30437887Amborella trichopodaAegilops tauschii35.3853.4379.95374forward
CNT30667060Amborella trichopodaTriticum dicoccoides17.4128.9883.7184forward
CNT30471290Amborella trichopodaSaccharum spontaneum43.5251.2280.43460forward
CNT30608385Amborella trichopodaGossypium raimondii37.8472.7380.5400forward
CNT30218287Amborella trichopodaKalanchoe fedtschenkoi11.2622.9385.71119forward
CNT30650282Amborella trichopodaRosa chinensis30.6527.581.48324forward
CNT30686069Amborella trichopodaTriticum urartu19.5824.3286.47207forward
CNT30477100Amborella trichopodaArabidopsis halleri21.4857.4781.94227forward
CNT30368062Amborella trichopodaSorghum bicolor37.5636.1280.6397forward
CNT30620815Amborella trichopodaCajanus cajan15.2322.0285.71161forward
CNT30597069Amborella trichopodaOryza meridionalis40.0221.1480.85423forward
CNT30358838Amborella trichopodaLactuca sativa29.4245.4780.06311forward
CNT30420528Amborella trichopodaPapaver somniferum23.9413.2781.03253forward
CNT30571189Amborella trichopodaVitis vinifera16.0827.685.29170forward
CNT30101941Amborella trichopodaOryza rufipogon29.1436.8981.17308forward
CNT30496713Amborella trichopodaDigitaria exilis31.3221.9880.66331forward

Expression of CNT3055182

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MGTPTTIGVNNDLAAGEPSIPVRTPDHKAARRVEVEDGLLVKVLGRNHRLDHMLLEDSIRDLVAEFVRVPLVHRFGCKEESLHFLSPLTLQ*

>peptide 2 (77 aa)
MILRPVSPASPCGPPITKRPDGLRWKMVFSSRYLAGTTGLITCSLRTASEIWSQSLSGCPSFTDSDVKRKVSIFSLL*

>peptide 3 (62 aa)
MGLIIEKFRVKELQSFASKYQSTNTLCSQPLKTKTANKPPKEGNQKKKKRTTIIHTNTYNNQ*

>peptide 4 (57 aa)
MKISCFNYAVVVAAAVLRNLPLPPLLRSRSIAIIPGLKSKFSFTIFNISLSGIRPVP*

>peptide 5 (74 aa)
MDEDLMFQLCGGCSGCSLKEPPITSSLEVEVDSNHSRPEVEVLLHNLQYILIRDQASSIGVHKNGEWLGDTNGV*

>peptide 6 (71 aa)
LEVQVKNNYTNIINKLLAYELPSDAAALKSHQGFIDGVDHREIPSQRITVFRFQIPVHKYFMLPTLKNKNS*

>peptide 7 (52 aa)
MRPAQCTYEPNLKPQHSWQPGEQCRPRSYQPWWGPCLRRHPLHGHPNHHRCQ*

Sequence

>CNT3055182
CTAGAAGTTCAAGTGAAAAATAATTACACAAACATCATCAATAAATTGCTTGCGTACGAGTTACCAAGTGACGCTGCTGCCTTGAAAAGTCACCAAGGTT
TTATAGATGGGGTTGATCATAGAGAAATTCCGAGTCAAAGAATTACAGTCTTTCGCTTCCAAATACCAGTCCACAAATACTTTATGCTCCCAACCCTTAA
AAACAAAAACAGCTAATAAACCACCAAAGGAAGGCAACCAAAAAAAAAAAAAAAGAACCACCATAATTCATACAAACACTTATAACAACCAGTAGAAATA
ATAGTAGAATTCGGCATCTTATTGGCCGTCAGCTCGGAACATAAAGGGTCGAATCGATGGATGAAGATCTCATGTTTCAATTATGCGGTGGTTGTAGCGG
CTGCAGTCTTAAGGAACCTCCCATTACCTCCTCTCTTGAGGTCGAGGTCGATAGCAATCATTCCAGGCCTGAAGTCGAAGTTCTCCTTCACAATCTTCAA
TATATCCTTATCAGGGATCAGGCCAGTTCCATAGGTGTCCACAAAAACGGAGAGTGGCTCGGGGACACCAATGGCGTATGAGACCTGCACAATGCACCTA
CGAGCCAAACCTGAAGCCACAACACTCTTGGCAGCCTGGCGAACAATGTAGGCCCCGCTCCTATCAACCTTGGTGGGGTCCTTGCCTGAGAAGGCACCCC
CTCCATGGGCACCCCAACCACCATAGGTGTCAATAATGATCTTGCGGCCGGTGAGCCCAGCATCCCCGTGCGGACCCCCGATCACAAAGCGGCCAGACGG
GTTGAGGTGGAAGATGGTCTTCTCGTCAAGGTACTTGGCAGGAACCACAGGCTTGATCACATGCTCCTTGAGGACAGCATCAGAGATTTGGTCGCAGAGT
TTGTCAGGGTGCCCCTCGTTCACAGATTCGGATGTAAAGAGGAAAGTCTCCATTTTCTCTCTCCTTTAACTCTGCAATAATAGCAATGGACACGTAAATC
AAATGGTCTCAAGAAACATCAAGGTGCCAGTTCAAGAATAACTTTGAGAGCAATGAC