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Detailed information on CNT3022568


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 6e-141

BLAST vs NONCODE:
NONPOPT000587, E-value = 3e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549537Populus trichocarpaIpomoea triloba27.5757.2184.25381forward
CNT30729048Populus trichocarpaCorchorus capsularis20.1942.5388.17279forward
CNT30524807Populus trichocarpaPhaseolus vulgaris26.4141.3884.66365forward
CNT30650282Populus trichocarpaRosa chinensis28.0832.9487.89388forward

Expression of CNT3022568

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHEIRPLRIANDYRPAARQTELFISTNKISIAQKG*

>peptide 2 (33 aa)
MLSRDENSVDTNRDHCTIVIEVLNSNLSLAIRS*

>peptide 3 (41 aa)
MAQRHILGGLISGITKHMALVTSTNLLWALGKVTVDTLGNIR

>peptide 4 (52 aa)
MSVCSCLQEPITPPLEIQVDGHHSRPKVKALLHNLKDLLVRNFSSAIGVHKD*

>peptide 5 (55 aa)
MGSPATIGVNNDLASSETCITMRTTNNKTARWVEVKDSFLIKVLLRDNRLDDILL*

>peptide 6 (29 aa)
FFFFFFLLSNNLFRPKNTLLHFAAVLMQT*

Sequence

>CNT3022568
GTTTTTTTTTTTTTTTTTTCTCTTGAGCAATAATTTGTTTCGTCCAAAGAACACATTACTACATTTTGCTGCTGTTCTAATGCAAACTTAACAGGCATTT
GTTACTTCCAGTGCCCTCAATTCAAACAAAATTTCACACATTTTCACACCAGCACTGGGAACAAAATGCGAAGGATAAGAAAAACCAAAGGAAAAAAAAA
AAAAAGAAATGAAAATGAATAGGGTATCTTAATGCATGAGATTAGACCATTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTC
ATAAGTACCAATAAAATAAGCATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGCTTCTCCCATTTGAGGGGCTTGACAACTTCCCAGGTG
AAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCAGCTGTCTTCAAGAACCTATTACCCCCCCTCTTGAGATCCAGGTTGATGGTCATCATTCCAGGCC
TAAAGTCAAAGCTCTCCTTCACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGTGTCCACAAAGACTGACAAAGGCTCAGGTACACC
AATAGCATAGGAAACTTGCACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCTTGCCTAACAATGTAAGCACCACTCCTATCCACC
TTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCAGGTACACCAATAGCATAGGAAACTTGCACAATGCACCTACGAGCAAGACCATTTGC
TACGATGCTCTTGGCAGCTTGCCTAACAATGTAAGCACCACTCCTATCCACCTTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCCCCAG
CCACCATAGGTGTCAATAATGATCTTGCGTCCAGTGAGACCTGCATCACCATGAGGACCACCAATAACAAAACGGCCAGATGGGTTGAGGTGAAAGATAG
TTTTCTCATCAAGGTACTTCTCCGGGATAACAGGCTTGATGACATACTCCTTTAGATCAGCGGCAATTTCATCATTTGTGACAGTCTCATCATGCTGAGT
AGAGATGAGAACAGTGTGGACACGAACAGGGACCATTGCACCATTGTCATTGAAGTACTCAACAGTAACTTGAGTCTTGCCATCAGGTCTTAACCAAGGG
CAGGTTCCATTCTTCCTAACCTCGGTGAGGCGAGCACCAAGCTTGGTGGCAAGAACATGGCTCAAAGGCATATACTCGGGGGTCTCATCAGTGGCATAAC
CAAACATATGGCCCTGGTCACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCCGG