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Detailed information on CNT30402686


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4H1G4|METK1_BETVU, E-value = 8e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673052Beta vulgarisSetaria viridis67.9966.6785.37410forward
CNT30549537Beta vulgarisIpomoea triloba36.3232.8885.84219forward
CNT30266655Beta vulgarisChenopodium quinoa60.732.5692.08366forward
CNT30490001Beta vulgarisOlea europaea32.8439.9281.82198forward
CNT3059692Beta vulgarisArabidopsis lyrata14.7630.885.3989forward
CNT30218668Beta vulgarisKalanchoe fedtschenkoi36.3256.5985.84219forward
CNT30650282Beta vulgarisRosa chinensis35.4918.1786.45214forward
CNT30432398Beta vulgarisPapaver somniferum32.1715.9886.6194forward
CNT30148817Beta vulgarisBrachypodium distachyon21.7211.3390.08131forward
CNT30101681Beta vulgarisOryza rufipogon35.498.3583.18214forward
CNT30574675Beta vulgarisOryza barthii16.0921.5184.5497forward
CNT30594307Beta vulgarisEragrostis curvula12.2721.0887.8474forward
CNT30551132Beta vulgarisOryza brachyantha13.9321.7690.4884forward
CNT30113329Beta vulgarisFicus carica67.537.7984.28407forward

Expression of CNT30402686

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MTKRPDGLRWKMVFSSRYFSGITGLITCSFKSAAISSLVTVSSCWVEMRTKVRVLLYNLQ

>peptide 2 (42 aa)
SKDTSVTHHTTKKHHTFHLVREQLQPVEEIRALALLIKNINQ*

Sequence

>CNT30402686
AAGCAAGGACACAAGTGTAACCCATCATACTACTAAAAAGCATCATACATTTCATTTGGTTAGAGAGCAGCTGCAGCCTGTGGAGGAGATCCGGGCACTT
GCTTTATTGATCAAAAATATTAATCAATGAATTCCGACTTCACTCTTTCTCTGACTTAAGCTTGGGGCTTGTCCCACTTGAGGGGCTTCACAACCTCCCA
TGTGAAGTCTGGGTCATCCCTACCGAAGTGTCCGTAAGCAGCGGTCTTCAAGTACCTGCTGCCACCCTTGAGAAGGTCAAGGTTGATGGCGATCATACCG
GGCCTGAAGTCGAAGGTCTCCTTAACAATTTTAAGGATTTCCTTGTCAGGGATCTTTCCAGTTCCGTAGGTGTCGATGATGATCTTACGACCAGTAAGAC
CAGCATCACCGTGAGGTCCACCAATGACGAAACGGCCAGATGGGTTAAGGTGGAAGATGGTCTTCTCATCAAGGTACTTCTCAGGGATCACAGGCTTGAT
CACGTGCTCCTTCAAGTCAGCTGCAATCTCGTCGTTGGTAACAGTTTCATCGTGCTGGGTTGAGATGAGGACGAAGGTCCGAGTCTTGTTATACAATTTG
CAG