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Detailed information on CNT30574675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000203, E-value = 7e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674842Oryza barthiiSetaria viridis38.5829.993.1174forward
CNT30522677Oryza barthiiSetaria italica39.6920.1893.3179forward
CNT30641080Oryza barthiiNymphaea colorata34.5917.4384.62156forward
CNT30266729Oryza barthiiChenopodium quinoa38.3613.4284.39173forward
CNT30402686Oryza barthiiBeta vulgaris21.5116.0984.5497forward
CNT30188823Oryza barthiiSecale cereale38.820.6486.86175forward
CNT30303722Oryza barthiiTriticum aestivum38.828.8888175forward
CNT30225924Oryza barthiiHordeum vulgare36.1428.9587.12163forward
CNT30441436Oryza barthiiAegilops tauschii31.4928.0188.03142forward
CNT30667060Oryza barthiiTriticum dicoccoides38.827.5686.29175forward
CNT30471290Oryza barthiiSaccharum spontaneum40.3520.2784.62182forward
CNT3014405Oryza barthiiZea mays39.6933.1591.62179forward
CNT30608385Oryza barthiiGossypium raimondii21.0617.2783.1695forward
CNT30218668Oryza barthiiKalanchoe fedtschenkoi21.0624.5586.3295forward
CNT3066706Oryza barthiiLeersia perrieri32.3742.9487.67146forward
CNT30650282Oryza barthiiRosa chinensis34.5913.2482.69156forward
CNT30686069Oryza barthiiTriticum urartu38.820.5688175forward
CNT30349160Oryza barthiiEragrostis tef33.0416.0784.56149forward
CNT30363315Oryza barthiiSorghum bicolor39.6921.5791.62179forward
CNT30597062Oryza barthiiOryza meridionalis38.3615.7384.39173forward
CNT30369469Oryza barthiiOryza glumipatula60.7556.3897.81274forward
CNT3055147Oryza barthiiAmborella trichopoda35.0316.3280.38158forward
CNT30148817Oryza barthiiBrachypodium distachyon35.0313.6783.54158forward
CNT30101810Oryza barthiiOryza rufipogon38.366.8284.97173forward
CNT30496713Oryza barthiiDigitaria exilis40.5812.1583.61183forward
CNT30116702Oryza barthiiOryza nivara26.1611.4984.75118forward
CNT30551132Oryza barthiiOryza brachyantha21.0624.6188.4295forward

Expression of CNT30574675

Peptides detected in this lncRNA

>peptide 1 (89 aa)
VLQMRLHNNLKTKRTRQTDRANCRALLQFQLTQKNEKRIKRRRYPNTKTLAATPISLATSQVDFNPFIIFPSSSSSMEQPVTTDQRHIR*

Sequence

>CNT30574675
GTATTACAGATGCGGTTACACAACAACCTGAAAACAAAAAGAACAAGACAAACTGATAGAGCAAACTGCAGAGCTCTCTTGCAGTTTCAGCTGACTCAAA
AAAATGAAAAAAGGATAAAACGCCGAAGATATCCGAACACTAAAACTCTGGCTGCTACACCGATATCACTAGCAACTTCGCAAGTCGATTTCAACCCTTT
CATCATCTTCCCATCTTCTTCTTCTTCTATGGAGCAACCAGTCACTACTGATCAAAGACACATCAGGTAGGTCGAGGTTGATGGTCATCATCCCGGGCCT
GAAATCGAAGTTCTCCTTGACGATCTTGAGGATCTCCTTGTCCGGGATCTTGCCGGTGCCGTAGGATTCGACGAACACGGAGAGCGGCTCGGGGACGCCG
ATGGCGTACGACACCTGCACGATGCAGCGGCGGGCGAGGCCGCTGGCGACG