« Back to Corchorus capsularis search


Detailed information on CNT30729048


BLAST search results

BLAST vs Swiss-Prot:
sp|A7Q0V4|METK5_VITVI, E-value = 7e-66

BLAST vs NONCODE:
NONATHT001922, E-value = 3e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673103Corchorus capsularisSetaria viridis42.6850.1883.93280forward
CNT30520870Corchorus capsularisSetaria italica42.6841.1883.57280forward
CNT30266729Corchorus capsularisChenopodium quinoa40.2420.4884.47264forward
CNT30524774Corchorus capsularisPhaseolus vulgaris42.8438.7686.83281forward
CNT30628558Corchorus capsularisVigna unguiculata45.4335.5684.56298forward
CNT30490001Corchorus capsularisOlea europaea27.2936.0986.59179forward
CNT30708643Corchorus capsularisGlycine max39.1846.3186.38257forward
CNT3047443Corchorus capsularisPrunus dulcis41.6222.8884.98273forward
CNT30638840Corchorus capsularisCapsicum annuum38.4129.5182.54252forward
CNT30172560Corchorus capsularisTrifolium pratense33.9932.7586.55223forward
CNT30146819Corchorus capsularisMedicago truncatula23.1720.2488.16152forward
CNT3017865Corchorus capsularisZea mays13.1138.7488.3786forward
CNT30608385Corchorus capsularisGossypium raimondii47.5656.7391.03312forward
CNT30218287Corchorus capsularisKalanchoe fedtschenkoi38.2648.3684.46251forward
CNT3066706Corchorus capsularisLeersia perrieri31.8661.4780.86209forward
CNT30650282Corchorus capsularisRosa chinensis48.1726.8389.87316forward
CNT30626924Corchorus capsularisDaucus carota30.9516.184.24203forward
CNT30367696Corchorus capsularisSorghum bicolor44.2133.7282.07290forward
CNT30597062Corchorus capsularisOryza meridionalis42.6825.4581.79280forward
CNT30432398Corchorus capsularisPapaver somniferum47.4125.6283.92311forward
CNT30570674Corchorus capsularisVitis vinifera43.7530.485.71287forward
CNT3022568Corchorus capsularisPopulus trichocarpa47.2622.4387.74310forward
CNT30148817Corchorus capsularisBrachypodium distachyon35.8220.3380.43235forward
CNT30496713Corchorus capsularisDigitaria exilis42.6818.5982.5280forward
CNT30551132Corchorus capsularisOryza brachyantha13.1122.2890.786forward
CNT30113329Corchorus capsularisFicus carica20.4312.4486.57134forward

Expression of CNT30729048

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVIIPGLKSKFSFTIWRISLSGIFPVPKLSTKTDKGSGTPIA*

Sequence

>CNT30729048
GGGACCGAATAAATATGAAAGGAAAAAGGGAGACATGACATTAGAAAAATAAATTTGATTATCCCAAATCCAAAGTACATATTACTACTAAGTATTTGCT
GCTGCCTTTGCAAAGCTAATTTCACAAGCAATCATAAAGAGGGCAGCTTGTTACTTTTCAGTGCCATCTATAAAGCAAAATTCTCATACATTTTTGGATC
ACCGACACTGATAATAAAAGGACACAATTCAAAAACAACCAGAATAAAAGAAAAATAAGAAAAAAAAAGAAAAAAGAAAATGAATATGGCATCATATGTA
TGAGATTAGAACATTAGGGGGATTGCTTAGAAGTTATAAAAGGCGGCTGTCTTCAAGAACCTGCCATTGCCACCCCTCTTGAGGTCCAAGTTGATGGTGA
TCATACCAGGCCTGAAGTCGAAGTTCTCCTTCACAATTTGGAGGATTTCCTTGTCGGGGATCTTTCCAGTTCCAAAGCTGTCAACAAAGACTGACAAGGG
CTCAGGCACACCAATAGCATAGGAAACCTGAACAAGGCACCTGCGGGCAAGCCCATTTGCTACGATGCTCTTGGCAGCCTGCCTAACAATGTAAGCACCA
CTCCTGTCCACCTTGGTTGGGTCCTTTCCAGAGAAAGCACCACCTCCGTGGGCTCC