« Back to Arabidopsis thaliana search


Detailed information on CNT30372626


BLAST search results

BLAST vs Swiss-Prot:
sp|P23686|METK1_ARATH, E-value = 1e-105

BLAST vs NONCODE:
NONATHT001922, E-value = 6e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549537Arabidopsis thalianaIpomoea triloba69.1166.5281.72443forward
CNT30490001Arabidopsis thalianaOlea europaea38.2249.481.63245forward
CNT30667060Arabidopsis thalianaTriticum dicoccoides25.2725.5184.57162forward
CNT3059692Arabidopsis thalianaArabidopsis lyrata38.5385.4794.33247forward
CNT3014998Arabidopsis thalianaZea mays17.6320.483.19113forward
CNT30606743Arabidopsis thalianaGossypium raimondii67.2440.3680.74431forward
CNT30218668Arabidopsis thalianaKalanchoe fedtschenkoi37.7562.5380.58242forward
CNT30650282Arabidopsis thalianaRosa chinensis63.9634.880410forward
CNT30626924Arabidopsis thalianaDaucus carota40.4120.5482.63259forward
CNT30477100Arabidopsis thalianaArabidopsis halleri46.875.9598300forward
CNT30367696Arabidopsis thalianaSorghum bicolor65.9949.1979.43423forward
CNT30620812Arabidopsis thalianaCajanus cajan37.2919.2481.17239forward
CNT30432398Arabidopsis thalianaPapaver somniferum64.934.2781.73416forward
CNT3022439Arabidopsis thalianaPopulus trichocarpa37.2936.683.26239forward
CNT30148817Arabidopsis thalianaBrachypodium distachyon20.4411.3387.02131forward
CNT30101941Arabidopsis thalianaOryza rufipogon65.3750.1879.71419forward
CNT30496713Arabidopsis thalianaDigitaria exilis68.1729.0279.86437forward
CNT30551132Arabidopsis thalianaOryza brachyantha12.3220.4786.0879forward

Expression of CNT30372626

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMILRPVRPASPWGPPMTNRPEGFKWKMVF

Sequence

>CNT30372626
TTATATAAGAACAACATGAAACTTACTCCAAGCCGTGTAAAAGTCGCCATAAAAACAAACACCCAATTGAAATAGCTCAAGTACAATGATACATAAACAC
AATAAACCACAAAAACAGAGAAATAAAAAAGTGAGCAGATAATTGGTTTGTCCCACTTGAGTGGCTTGACGACTTCCCAGGTGAAGTCAGGGTCGTCTCT
TCCAAAGTGTCCGTAAGCCGCAGTTTTCAAGAACCTTCCGTTTCCTCCTCTCTTTAGGTCAAGGTTAATTGTCATCATTCCTGGTCTGAAGTCGAAGCTC
TCCTTCACAATCTTTAGTATCTCCTTGTCTGGAATCAATCCAGTCTCATAAGTGTCCACAAAGACAGACAATGGCTCAGGGACTCCAATGGCGTATGAGA
CCTGAACAAGAGCCCTACGAGCCATCCCGTTAGCCACAACGCTCTTAGCTGCTTGTCTCACAATGTAGGCTCCGCTTCTGTCGACCTTGGTTGGGTCTTT
ACCTGAGAATGCACCGCCTCCGTGAGCTCCCCATCCACCGTAAGTGTCGATGATGATCTTACGCCCGGTGAGACCAGCGTCTCCATGGGGTCCACCGATG
ACGAATCGGCCTGAAGGGTTCAAGTGGAAGATGGTTTTCTC