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Detailed information on CNT30508528


BLAST search results

BLAST vs Swiss-Prot:
sp|P43280|METK1_SOLLC, E-value = 1e-63

BLAST vs NONCODE:
NONTPRT001916, E-value = 1e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672906Solanum lycopersicumSetaria viridis26.5915.983.33138forward
CNT30641037Solanum lycopersicumNymphaea colorata28.1328.4684.93146forward
CNT30549537Solanum lycopersicumIpomoea triloba41.2332.1383.18214forward
CNT30729630Solanum lycopersicumCorchorus capsularis43.3527.4784.44225forward
CNT30381458Solanum lycopersicumManihot esculenta38.1528.2183.84198forward
CNT30524774Solanum lycopersicumPhaseolus vulgaris30.0621.5285.9156forward
CNT30628558Solanum lycopersicumVigna unguiculata42.9726.6183.86223forward
CNT30490001Solanum lycopersicumOlea europaea37.7639.5283.67196forward
CNT30708643Solanum lycopersicumGlycine max42.774083.33222forward
CNT3047443Solanum lycopersicumPrunus dulcis48.7521.2182.61253forward
CNT30638840Solanum lycopersicumCapsicum annuum48.1729.2793.6250forward
CNT30188823Solanum lycopersicumSecale cereale24.6615.0985.16128forward
CNT30303722Solanum lycopersicumTriticum aestivum24.6621.1285.16128forward
CNT30225701Solanum lycopersicumHordeum vulgare35.6536.3584.32185forward
CNT30561874Solanum lycopersicumActinidia chinensis43.3525.5183.56225forward
CNT30172560Solanum lycopersicumTrifolium pratense42.9732.7582.06223forward
CNT30146819Solanum lycopersicumMedicago truncatula27.5519.0483.22143forward
CNT30441436Solanum lycopersicumAegilops tauschii23.724.2684.55123forward
CNT30667060Solanum lycopersicumTriticum dicoccoides35.6529.1381.08185forward
CNT3014405Solanum lycopersicumZea mays23.8922.9680.65124forward
CNT30606743Solanum lycopersicumGossypium raimondii48.7523.6983253forward
CNT30650282Solanum lycopersicumRosa chinensis48.7521.4883253forward
CNT30626924Solanum lycopersicumDaucus carota30.2512.4583.44157forward
CNT30686069Solanum lycopersicumTriticum urartu24.6615.0485.16128forward
CNT30620812Solanum lycopersicumCajanus cajan48.7520.3780.24253forward
CNT30570674Solanum lycopersicumVitis vinifera48.7526.883253forward
CNT3055147Solanum lycopersicumAmborella trichopoda28.7115.3982.55149forward
CNT3025499Solanum lycopersicumPopulus trichocarpa48.7534.7582.61253forward
CNT30148817Solanum lycopersicumBrachypodium distachyon33.3314.9783.24173forward
CNT30116702Solanum lycopersicumOryza nivara25.8213.0582.84134forward

Expression of CNT30508528

Peptides detected in this lncRNA

>peptide 1 (33 aa)
TNALIFKYIIIFLFLSLIFQGLRYPSNTMETGQ*

>peptide 2 (36 aa)
HKCTNFQVYNNISFSFLNIPRPKISIQHNGNRTITK*

Sequence

>CNT30508528
CACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAA
TAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGG
CAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAA
AATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTA
CGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGT
GGAAAATAGTATTCTCATC