« Back to Vigna radiata search


Detailed information on CNT3086110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Vigna radiataSetaria viridis25.9429.7783.1290forward
CNT30522642Vigna radiataSetaria italica28.4420.680.5318forward
CNT30549907Vigna radiataIpomoea triloba20.342.2781.5227forward
CNT30515028Vigna radiataJuglans regia26.2134.5185.32293forward
CNT30266655Vigna radiataChenopodium quinoa26.7426.683.95299forward
CNT30194995Vigna radiataPisum sativum26.7431.4183.95299forward
CNT30495282Vigna radiataOlea europaea24.8715.7981.65278forward
CNT30712013Vigna radiataGlycine max25.8564.6590.66289forward
CNT3047443Vigna radiataPrunus dulcis24.0622.5583.64269forward
CNT30158121Vigna radiataPistacia vera13.0623.3684.25146forward
CNT3090332Vigna radiataSolanum tuberosum20.1334.6283.56225forward
CNT30181754Vigna radiataSecale cereale11.6320.6784.62130forward
CNT30561874Vigna radiataActinidia chinensis25.432.283.45284forward
CNT30174161Vigna radiataTrifolium pratense26.7437.982.94299forward
CNT30144438Vigna radiataMedicago truncatula26.7461.1582.94299forward
CNT30471855Vigna radiataSaccharum spontaneum27.9133.9184.29312forward
CNT30650282Vigna radiataRosa chinensis26.4825.1384.8296forward
CNT30212612Vigna radiataHelianthus annuus6.6230.7187.8474forward
CNT30686069Vigna radiataTriticum urartu16.3721.583.61183forward
CNT30368076Vigna radiataSorghum bicolor25.9426.6384.14290forward
CNT30597062Vigna radiataOryza meridionalis28.1828.6482.22315forward
CNT30432398Vigna radiataPapaver somniferum27.5525.3781.49308forward
CNT30571189Vigna radiataVitis vinifera11.4520.7884.38128forward
CNT3024331Vigna radiataPopulus trichocarpa25.2227.0481.91282forward
CNT3035650Vigna radiataCucumis melo29.2524.2683.18327forward
CNT30148817Vigna radiataBrachypodium distachyon27.5526.6484.42308forward
CNT30101810Vigna radiataOryza rufipogon28.1812.4382.22315forward
CNT30116702Vigna radiataOryza nivara28.1830.6782.22315forward
CNT30174424Vigna radiataVigna angularis30.0541.3398.81336forward

Expression of CNT3086110

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKLVPEGDINSQKVVIRMPQIQTEKLKTRVPFSN*

>peptide 2 (70 aa)
MLALVVISPKTMTRLVLVHVSQATLLSGSCSRQASXTASEIWSQSLSGCPSFTDSEVNRNVSAIFKLLNL*

>peptide 3 (33 aa)
MRNKEKELQKSNYDYKIRQTPHHKAISQHKVNV*

>peptide 4 (57 aa)
QPCYLDLAQGRRQGQHRRFGRRACLGGHARPGQYQDSAAQCSQGPCSCRHQVPHRLR*

>peptide 5 (71 aa)
ATLLSGSCSRQASRTASEIWSQSLSGWPCTPWAISGLCCSMFTRTLQLSASSPTSSEMKPMFLQVSRTIFS*

>peptide 6 (38 aa)
MSHKQPCYLDLAQGRRQXQHRRFGRRACLGVPRSPTRR*

>peptide 7 (55 aa)
NLAIWILLKAGVKDSIGDLVAELVWVAMHALGNIRTLLLNVHKDLAVVGIKSHIV*

Sequence

>CNT3086110
GCAACCTTGCTATCTGGATCTTGCTCAAGGCAGGCGTCAAGGACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGGCCATGCACGCCCTGGGCAA
TATCAGGACTCTGCTGCTCAATGTTCACAAGGACCTTGCAGTTGTCGGCATCAAGTCCCACATCGTCTGAGATGAAGCCGATGTTCCTGCAGGTGTCACG
CACGATCTTCTCGTAGTCAATGTTGGCCTTGGTGGTGATTTCTCCGAAGACCATGACCAGGTTGGTTTTGGTGCATGTCTCACAAGCAACCTTGCTATCT
GGATCTTGCTCAAGGCAGGCGTCAAGNACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGTCCCTCGTTCACCGACTCGGAGGTAAACAGAAATG
TCTCTGCCATCTTTAAACTTTTGAACCTGTAAACACACACATACGAAAAATGAAATTAGTACCTGAAGGGGATATAAATTCGCAAAAGGTTGTTATACGC
ATGCCTCAAATTCAGACAGAAAAACTGAAAACAAGAGTGCCATTTTCTAACTAAACAGAGGCCGTTGGGTTTAAGGGAAGGGGCCAATTCCTTCCTCAGA
GTCAGAATCCCTATCAGGAAAGATGCCCATATATGGTGACCCACTCAGACTAAATTGATTCCTCCTAAGGAATATATGAGAAACAAGGAAAAAGAACTAC
AAAAAAGCAATTACGATTACAAAATTCGCCAAACCCCCCATCACAAAGCCATATCTCAGCACAAGGTCAATGTTTGATTGTAAGCTCAAAATCCCCAAAA
ATGATGTTTTTTTTTTCATAGCTTAAATGTAAAAAAGAAAAAAAAAAAGCCATTTGTATAGATTTAGATTAGATTTGAAAGGCTAACGCGTTCCCGCAGC
AAATAAAGAAACAAAGTTTGGGGAAGCATAATCCTAGATCAACCCAGTTAAGGAAAAAACAAAGCAAAACAACCCAGATGTGCAAGATCCGAAATTGAAG
CAGAGTATCCAGTATATGATAGGAATGTTGAAGAAAAACAAGGTTGCAACGTATGGAAAGAAGAGCGAGTACCTTGAAAGGTAGAACAACAGAGAGAAGG
TTAAGGTGGCCTTGATCT