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Detailed information on CNT30144438


BLAST search results

BLAST vs Swiss-Prot:
sp|A4ULF8|METK_MEDSF, E-value = 2e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Medicago truncatulaSetaria viridis59.129.6780.28289forward
CNT30522642Medicago truncatulaSetaria italica35.9911.480.68176forward
CNT30549907Medicago truncatulaIpomoea triloba56.2451.2183.27275forward
CNT30266655Medicago truncatulaChenopodium quinoa61.1526.684.28299forward
CNT30194995Medicago truncatulaPisum sativum70.1436.0393.29343forward
CNT30495282Medicago truncatulaOlea europaea65.4418.1782.81320forward
CNT30711739Medicago truncatulaGlycine max61.3525.0686.67300forward
CNT3090332Medicago truncatulaSolanum tuberosum49.4937.2386.78242forward
CNT30561874Medicago truncatulaActinidia chinensis56.8531.5284.17278forward
CNT3086110Medicago truncatulaVigna radiata61.1526.7482.94299forward
CNT30174161Medicago truncatulaTrifolium pratense67.4841.8395.76330forward
CNT30310308Medicago truncatulaCamelina sativa28.0259.3184.67137forward
CNT3082721Medicago truncatulaBrassica juncea13.723.1892.5467forward
CNT30471855Medicago truncatulaSaccharum spontaneum61.7632.8383.77302forward
CNT30650282Medicago truncatulaRosa chinensis65.4427.1685.62320forward
CNT30368076Medicago truncatulaSorghum bicolor59.126.5482.01289forward
CNT30597062Medicago truncatulaOryza meridionalis52.5623.3681.71257forward
CNT30420528Medicago truncatulaPapaver somniferum61.1515.6982.27299forward
CNT3055147Medicago truncatulaAmborella trichopoda32.9216.6383.23161forward
CNT3024331Medicago truncatulaPopulus trichocarpa56.2426.3781.45275forward
CNT30101810Medicago truncatulaOryza rufipogon53.1710.2681.92260forward
CNT30116702Medicago truncatulaOryza nivara53.1725.3281.92260forward

Expression of CNT30144438

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLTRTLQLSASRPTSSETKPMFLHVLRTIFS*

>peptide 2 (58 aa)
MDTDRNHGALVIEILNSDLGLSIRSFCKMAMNTLSNIRTLLFNVDKDFAVVSIKTNII*

>peptide 3 (56 aa)
ITCSFKSAAISSLVTVSSCCVEIRTVWTRIGTMAPLSLKYSIVTWVFPSGLFVRWP*

>peptide 4 (47 aa)
MLVFVQVSHATLLSGSCSRQASRTASEIWSQSLSGCPSFTDSDVYRKV

>peptide 5 (39 aa)
MQLCCLDLARGKHLERHQRSGRKACRGVPRSQIQMCIGKF

Sequence

>CNT30144438
GATCACATGTTCCTTCAAATCAGCTGCAATTTCGTCATTGGTGACAGTTTCATCGTGCTGTGTTGAGATAAGGACAGTATGGACACGGATCGGAACCATG
GCGCCCTTGTCATTGAAATACTCAATAGTGACTTGGGTCTTTCCATCAGGTCTTTTTGTAAGATGGCCATGAACACCTTGAGCAATATCAGGACTCTGTT
GTTCAATGTTGACAAGGACTTTGCAGTTGTCAGCATCAAGACCAACATCATCTGAAACAAAACCTATGTTCCTGCATGTTTTACGGACAATCTTTTCGTA
GTCAACATTTGCTTTTGTTGTGATCTCACCAAAGACCATAACCATGTTGGTCTTTGTGCAAGTTTCACATGCAACTTTGCTGTCTGGATCTTGCTCGAGG
CAAGCATCTAGAACGGCATCAGAGATCTGGTCGCAAAGCTTGTCGGGGTGTCCCTCGTTCACAGATTCAGATGTGTATAGGAAAGTTTC