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Detailed information on CNT30597062


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 6e-171

BLAST vs NONCODE:
NONATHT001922, E-value = 3e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673377Oryza meridionalisSetaria viridis36.9164.5591.13406forward
CNT30618114Oryza meridionalisSesamum indicum20.0948.8982.81221forward
CNT30266655Oryza meridionalisChenopodium quinoa33.7333.0184.64371forward
CNT30729048Oryza meridionalisCorchorus capsularis25.4542.6881.79280forward
CNT30194995Oryza meridionalisPisum sativum22.8226.3782.07251forward
CNT30495282Oryza meridionalisOlea europaea32.3620.2281.46356forward
CNT30711739Oryza meridionalisGlycine max23.9121.9784.79263forward
CNT3047443Oryza meridionalisPrunus dulcis23.7321.8885.06261forward
CNT3090332Oryza meridionalisSolanum tuberosum25.8243.6984.15284forward
CNT3086110Oryza meridionalisVigna radiata28.6428.1882.22315forward
CNT30174161Oryza meridionalisTrifolium pratense33.1846.2679.45365forward
CNT30144438Oryza meridionalisMedicago truncatula23.3652.5681.71257forward
CNT30310308Oryza meridionalisCamelina sativa9.4545.0283.65104forward
CNT3082721Oryza meridionalisBrassica juncea11.6444.2987.5128forward
CNT30471855Oryza meridionalisSaccharum spontaneum34.7341.5291.1382forward
CNT3066706Oryza meridionalisLeersia perrieri1961.4784.21209forward
CNT30650282Oryza meridionalisRosa chinensis33.1830.9884.11365forward
CNT30212612Oryza meridionalisHelianthus annuus15.9172.6183.43175forward
CNT30368076Oryza meridionalisSorghum bicolor32.0932.4292.07353forward
CNT30429132Oryza meridionalisPapaver somniferum32.2722.3882.25355forward
CNT3022500Oryza meridionalisPopulus trichocarpa26.8244.0383.73295forward
CNT3035650Oryza meridionalisCucumis melo34.5528.1985.79380forward
CNT30148817Oryza meridionalisBrachypodium distachyon34.9133.2286.2384forward
CNT30574675Oryza meridionalisOryza barthii15.7338.3684.39173forward
CNT30174424Oryza meridionalisVigna angularis344682.09374forward

Expression of CNT30597062

Peptides detected in this lncRNA

>peptide 1 (64 aa)
QTCCMHNFKRHKGHFQLQQTHELSTHRSPGNHIRTDNQNIGGFISSSQSSVASFLLSPLHKLKQ*

>peptide 2 (82 aa)
MLGRDEDGVDTDRDHGTALIAVLNSHLGLPVSCISKHVSLVTSTNLLRALGEVAVHTLCNVRGLLLDVHKHLAVVSIETDIS*

>peptide 3 (93 aa)
MRTVWTRTGTMAPLSLRYSTVTWVFPSVAYPNMCPWSPAPISSGRLVKWPCTPCAMSGDCCSMFTSTLQWSASRPTSADTKPMLRHVSLTIFS*

>peptide 4 (34 aa)
MLHCGRPWLGPCQRRHHHRELPSHHKCQQQSHRW*

>peptide 5 (46 aa)
MTMFVLVQVSQATLLSGSSARQASSTASETWSQSLSGWPSFTDSEVK

>peptide 6 (85 aa)
MMIMPGLKSKFSFTILRISLSGILPVPYVSTNTDSGSGTPMAYDTWTMQRRARPLATMLLAACLATYAPLRSTLVGSLPEKAPPP*

Sequence

>CNT30597062
AACAAACATGTTGCATGCACAACTTCAAAAGGCACAAAGGTCACTTCCAGCTTCAGCAAACACATGAACTGAGCACTCACAGATCACCAGGGAACCATAT
AAGGACAGATAACCAAAACATAGGAGGTTTCATTTCTTCTTCTCAAAGTAGTGTAGCATCTTTCCTTCTTTCACCATTACATAAGCTTAAGCAATAACAG
ATAACAAATCCTCCTCCTCCTCCTCTAGGTAAAATATTCAAACACAATACCCTTATAAGTACTTATTATTAGGAAAGTAGCGTCCGTTGCCGCCTTTCTT
GAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAGGGATCCTGCCAGTGCCGTATGTG
TCGACGAATACGGACAGTGGCTCAGGGACACCAATGGCGTATGATACTTGGACAATGCAGCGGCGAGCAAGGCCACTAGCAACAATGCTCTTGGCAGCTT
GCCTTGCGACGTATGCTCCACTGCGGTCGACCTTGGTTGGGTCCTTGCCAGAGAAGGCACCACCACCGTGAGCTCCCCAGCCACCATAAGTGTCAGCAGC
AATCTCATCGTTGGTGACTGTCTCATCATGCTGGGTAGAGATGAGGACGGTGTGGACACGGACAGGGACCATGGCACCGCTCTCATTGCGGTACTCAACA
GTCACTTGGGTCTTCCCGTCAGTTGCATATCCAAACATGTGTCCCTGGTCACCAGCACCAATCTCCTCAGGGCGCTTGGTGAAGTGGCCGTGCACACCCT
GTGCAATGTCAGGGGACTGCTGCTCGATGTTCACAAGCACCTTGCAGTGGTCAGCATCGAGACCGACATCAGCTGACACAAAACCGATGTTACGGCATGT
CTCCCTGACAATCTTCTCATAGTCGACGTTAGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTTGTCTTGGTGCAGGTCTCACAAGCGACCTTG
CTGTCAGGGTCCTCGGCGAGGCAGGCATCAAGCACAGCATCTGAGACTTGGTCGCAGAGCTTGTCAGGGTGGCCCTCGTTCACGGACTCTGAGGTAAAGA