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Detailed information on CNT30551132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673491Oryza brachyanthaSetaria viridis52.8528.2994.12204forward
CNT30521359Oryza brachyanthaSetaria italica53.8931.5691.83208forward
CNT30641080Oryza brachyanthaNymphaea colorata24.0910.3988.1793forward
CNT30549537Oryza brachyanthaIpomoea triloba20.4711.8689.8779forward
CNT30372626Oryza brachyanthaArabidopsis thaliana20.4712.3286.0879forward
CNT30266655Oryza brachyanthaChenopodium quinoa26.429.0786.27102forward
CNT30729048Oryza brachyanthaCorchorus capsularis22.2813.1190.786forward
CNT30381458Oryza brachyanthaManihot esculenta41.7122.9383.23161forward
CNT30402686Oryza brachyanthaBeta vulgaris21.7613.9390.4884forward
CNT30524774Oryza brachyanthaPhaseolus vulgaris21.511.4586.7583forward
CNT30628391Oryza brachyanthaVigna unguiculata21.57.2485.5483forward
CNT30490001Oryza brachyanthaOlea europaea21.516.7389.1683forward
CNT30712535Oryza brachyanthaGlycine max22.5420.9686.2187forward
CNT3047443Oryza brachyanthaPrunus dulcis25.138.1384.5497forward
CNT30189384Oryza brachyanthaSecale cereale24.8712.2190.6296forward
CNT30301451Oryza brachyanthaTriticum aestivum33.1635.7594.53128forward
CNT30225935Oryza brachyanthaHordeum vulgare5044.0692.75193forward
CNT30172560Oryza brachyanthaTrifolium pratense25.9114.6883100forward
CNT30146819Oryza brachyanthaMedicago truncatula21.511.0584.3483forward
CNT30667060Oryza brachyanthaTriticum dicoccoides23.0614.0289.8989forward
CNT3059692Oryza brachyanthaArabidopsis lyrata18.3924.5790.1471forward
CNT30471290Oryza brachyanthaSaccharum spontaneum27.4611.895.28106forward
CNT3017865Oryza brachyanthaZea mays47.9383.3391.35185forward
CNT30608385Oryza brachyanthaGossypium raimondii21.2414.9190.2482forward
CNT30218668Oryza brachyanthaKalanchoe fedtschenkoi27.4627.3986.79106forward
CNT3067553Oryza brachyanthaLeersia perrieri62.1855.1793.33240forward
CNT30650282Oryza brachyanthaRosa chinensis27.729.0889.72107forward
CNT30686069Oryza brachyanthaTriticum urartu23.0610.4688.7689forward
CNT30349160Oryza brachyanthaEragrostis tef50.5221.0493.85195forward
CNT30368062Oryza brachyanthaSorghum bicolor50.5217.7492.82195forward
CNT30620812Oryza brachyanthaCajanus cajan25.137.8183.5197forward
CNT30597069Oryza brachyanthaOryza meridionalis96.6318.6494.91373forward
CNT30570674Oryza brachyanthaVitis vinifera22.289.1188.3786forward
CNT3025721Oryza brachyanthaPopulus trichocarpa21.2410.8890.2482forward
CNT30148817Oryza brachyanthaBrachypodium distachyon24.098.0490.3293forward
CNT30101810Oryza brachyanthaOryza rufipogon96.6314.7194.64373forward
CNT30574675Oryza brachyanthaOryza barthii24.6121.0688.4295forward
CNT30496713Oryza brachyanthaDigitaria exilis27.727.196.26107forward
CNT30116702Oryza brachyanthaOryza nivara71.2426.7893.09275forward
CNT30594307Oryza brachyanthaEragrostis curvula21.7623.9394.0584forward
CNT30113329Oryza brachyanthaFicus carica21.767.892.8684forward
CNT30725315Oryza brachyanthaLupinus angustifolius25.399.7487.7698forward

Expression of CNT30551132

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMIMPGLKSKFSFTILRISLSGILPVPYVS

>peptide 2 (29 aa)
MLCGEETKHHNGIGQKLPEGSFRQRASPT*

Sequence

>CNT30551132
ATAACAGATCATAAATCCTCCTCCTCTAGGTAAATATCCAAACACAATACCCTTACAAGTACTTATTATTAGGAGAGTAACGTGCATGGGTATAAATGGT
AGCAAGGGGCAAGGTTAAGAATCACAATGCTGTGCGGAGAGGAAACAAAACATCATAATGGGATAGGGCAAAAGCTTCCGGAAGGGAGCTTTAGGCAGAG
GGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCTGGGTCGTCCCTTCCGAAGTGACCGTAAGCCGCCGTCTTGAGGTCAAGGTTGATGA
TGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAGGGATCCTGCCAGTGCCGTATGTGTCG