Detailed information on CNT30310308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672906Camelina sativaSetaria viridis77.0620.5182.02178forward
CNT30522677Camelina sativaSetaria italica34.639.0286.2580forward
CNT30549907Camelina sativaIpomoea triloba47.6220.4887.27110forward
CNT30515028Camelina sativaJuglans regia7119.3282.32164forward
CNT30266730Camelina sativaChenopodium quinoa73.5915.1884.71170forward
CNT30194995Camelina sativaPisum sativum59.3114.3985.4137forward
CNT30495282Camelina sativaOlea europaea26.843.5288.7162forward
CNT30711739Camelina sativaGlycine max96.5418.6382.06223forward
CNT3047443Camelina sativaPrunus dulcis76.6214.8481.92177forward
CNT3090332Camelina sativaSolanum tuberosum47.6216.9286.36110forward
CNT30561874Camelina sativaActinidia chinensis30.748.0587.3271forward
CNT30174161Camelina sativaTrifolium pratense59.3117.3685.4137forward
CNT30144438Camelina sativaMedicago truncatula59.3128.0284.67137forward
CNT30471855Camelina sativaSaccharum spontaneum73.5918.4883.53170forward
CNT30650282Camelina sativaRosa chinensis73.5914.4382.35170forward
CNT30367875Camelina sativaSorghum bicolor74.8920.9283.24173forward
CNT30597062Camelina sativaOryza meridionalis45.029.4583.65104forward
CNT30429132Camelina sativaPapaver somniferum61.99.0287.41143forward
CNT3055147Camelina sativaAmborella trichopoda59.3114.1582.48137forward
CNT3024331Camelina sativaPopulus trichocarpa70.1315.5383.33162forward
CNT3036529Camelina sativaCucumis melo58.0131.2482.84134forward
CNT30116702Camelina sativaOryza nivara45.0210.1383.65104forward
CNT30174424Camelina sativaVigna angularis72.2920.5480.24167forward

Expression of CNT30310308

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSHMQLCSQGLALSKHRGSHQKPGHRVCLGVPH*

>peptide 2 (39 aa)
MLVLVHVSHATLLSGSCSKQASRIASETWSQSLSGCPSLT

>peptide 3 (54 aa)
IKTNISRDETNLPTSGSNNLLVVYFGRGSDLTKHHHHVGLGTCLTCNFALRVLL*

Sequence

>CNT30310308
CATCAAGACCAACATCAGCAGAGATGAAACCAATCTCCCTACAAGTGGATCTAACAATCTTCTCGTAGTCTACTTTGGCAGAGGTAGTGATCTCACCAAA
CACCATCACCATGTTGGTCTTGGTACATGTCTCACATGCAACTTTGCTCTCAGGGTCTTGCTCTAAGCAAGCATCGAGGATCGCATCAGAAACCTGGTCA
CAGAGTTTGTCTGGGTGTCCCTCATTGACGG