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Detailed information on CNT30116702


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 8e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Oryza nivaraSetaria viridis30.6740.6590.79315forward
CNT30520870Oryza nivaraSetaria italica19.3829.2687.94199forward
CNT30549907Oryza nivaraIpomoea triloba23.5645.0781.82242forward
CNT30515028Oryza nivaraJuglans regia18.7922.7381.87193forward
CNT30698521Oryza nivaraQuercus lobata13.6324.9684.29140forward
CNT30618114Oryza nivaraSesamum indicum19.5744.4780.6201forward
CNT30266655Oryza nivaraChenopodium quinoa32.9130.0783.14338forward
CNT30194995Oryza nivaraPisum sativum23.2725.1182.43239forward
CNT30495282Oryza nivaraOlea europaea32.6219.0280335forward
CNT30711739Oryza nivaraGlycine max25.6121.9784.41263forward
CNT3047443Oryza nivaraPrunus dulcis25.4121.8884.67261forward
CNT30158121Oryza nivaraPistacia vera16.8527.6882.66173forward
CNT3090332Oryza nivaraSolanum tuberosum21.8134.4682.59224forward
CNT30303722Oryza nivaraTriticum aestivum19.473384.5200forward
CNT30225701Oryza nivaraHordeum vulgare18.0136.3584.32185forward
CNT30561874Oryza nivaraActinidia chinensis27.9532.5482.93287forward
CNT3086110Oryza nivaraVigna radiata30.6728.1882.22315forward
CNT30508528Oryza nivaraSolanum lycopersicum13.0525.8282.84134forward
CNT30174161Oryza nivaraTrifolium pratense25.0232.5780.54257forward
CNT30144438Oryza nivaraMedicago truncatula25.3253.1781.92260forward
CNT30441436Oryza nivaraAegilops tauschii19.4739.4584200forward
CNT30662024Oryza nivaraTriticum dicoccoides11.3923.0390.6117forward
CNT30310308Oryza nivaraCamelina sativa10.1345.0283.65104forward
CNT3059692Oryza nivaraArabidopsis lyrata6.9124.5790.1471forward
CNT3082721Oryza nivaraBrassica juncea7.2125.6187.8474forward
CNT3014998Oryza nivaraZea mays30.6756.8689.21315forward
CNT30218287Oryza nivaraKalanchoe fedtschenkoi19.1837.9679.19197forward
CNT3067553Oryza nivaraLeersia perrieri20.0647.3692.23206forward
CNT30650282Oryza nivaraRosa chinensis30.8726.9182.97317forward
CNT30212612Oryza nivaraHelianthus annuus9.6441.0882.8399forward
CNT30624603Oryza nivaraDaucus carota14.0221.8284.03144forward
CNT30686069Oryza nivaraTriticum urartu20.1624.3285.02207forward
CNT30344080Oryza nivaraEragrostis tef6.1321.8888.8963reverse complement
CNT30477100Oryza nivaraArabidopsis halleri17.8246.3380.33183forward
CNT30368076Oryza nivaraSorghum bicolor29.4127.7391.39302forward
CNT30429132Oryza nivaraPapaver somniferum23.9515.5182.93246forward
CNT30571189Oryza nivaraVitis vinifera15.0925.1681.29155forward
CNT3022500Oryza nivaraPopulus trichocarpa23.7636.4281.97244forward
CNT3035650Oryza nivaraCucumis melo33.0125.1584.37339forward
CNT30331991Oryza nivaraDioscorea rotundata13.2428.7583.82136forward
CNT30148817Oryza nivaraBrachypodium distachyon32.7229.0786.01336forward
CNT30574675Oryza nivaraOryza barthii11.4926.1684.75118forward
CNT30594307Oryza nivaraEragrostis curvula8.1823.9395.2484forward
CNT30174424Oryza nivaraVigna angularis31.4539.7382.35323forward
CNT30551132Oryza nivaraOryza brachyantha25.1266.8493.02258forward

Expression of CNT30116702

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAYDTWTMQRRARPLATMLLAACLATYAPLRSTLVGSLPEKGAW*

>peptide 2 (38 aa)
MSGDCCSMFTSTLQWSASRPTSADTKPMLRHVSLTIFS*

>peptide 3 (49 aa)
MLHCGQPWLGPCQRRALGEVAVHTLCNVRGLLLDVHKHLTVVSIETDIS*

>peptide 4 (49 aa)
MTMFVLVQVSQATLLSGSSARQASSTASETWSQSLSGWPSFTDSEVKRKV

>peptide 5 (32 aa)
MAAGGRLRITMLSSEETKHHNGTEQKLPKGSF*

>peptide 6 (30 aa)
NFKRHKGHFQLQQTHELSTHRSPGNHIGIE*

Sequence

>CNT30116702
TCAACTTCAAAAGGCACAAAGGTCACTTCCAGCTTCAGCAAACACATGAACTGAGCACTCACAGATCACCAGGGAACCATATAGGGATAGAATAACCAAA
ACATAGGAGGTTTCATTTCTTCTTCTCAAAGTAGTGTAGCATCTTTCCTTCTTTCACCATTACATAAGCTTAAGCAATAACAGATAACAAATCCTCCTCC
TCCTCCTCTAGGTAAAATATTCAAACACAATACCCTTATAAGTACTTATTATTAGGAAAGTAGCGTGCATGGGCATAAATGGCAGCGGGGGGCAGGTTAA
GAATCACAATGCTGAGCAGCGAGGAAACAAAACACCATAATGGGACAGAGCAAAAGCTTCCGAAAGGGAGCTTTTAGGCAGAAGGCTTCTCCCACTTGAG
GGGCTTCACCACCTCCCAGGTGAAGTCTGGGTCGTCCCTTCCGAAGTGACCGTAAGCCGCCGTCTTGAGGTAGCGTCCGTTGCCGCCTTTCTTGAGGATC
TCCTTGTCAGGGATCCTGCCAGTGCCGTATGTGTCGACGAATACGGACAGTGGCTCTGGGACACCGATGGCGTATGATACTTGGACAATGCAGCGGCGAG
CAAGGCCACTAGCAACAATGCTCTTGGCAGCTTGCCTTGCGACGTATGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCAGAGAAGGGCGCTTGGTG
AAGTGGCCGTGCACACCCTGTGCAATGTCAGGGGACTGCTGCTCGATGTTCACAAGCACCTTACAGTGGTCAGCATCGAGACCGACATCAGCTGACACAA
AACCGATGTTACGGCATGTCTCCCTGACAATCTTCTCATAGTCAACGTTAGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTTGTCTTGGTGCA
GGTCTCACAAGCGACCTTGCTGTCAGGGTCCTCGGCGAGGCAGGCATCAAGCACAGCATCTGAGACTTGGTCGCAGAGCTTGTCAGGGTGGCCCTCGTTC
ACAGACTCCGAGGTAAAGAGGAAGGTA