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Detailed information on CNT30175528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Vigna angularisOryza sativa24.3619.0592.1176forward
CNT30675831Vigna angularisSetaria viridis25.3214.5593.6779forward
CNT30523531Vigna angularisSetaria italica25.3211.5293.6779forward
CNT30318276Vigna angularisCorylus avellana25.647.7693.7580forward
CNT30547713Vigna angularisIpomoea triloba26.69.6793.9883forward
CNT30701463Vigna angularisQuercus lobata25.9615.797.5381forward
CNT30376000Vigna angularisArabidopsis thaliana25.6421.399580forward
CNT30500546Vigna angularisCoffea canephora2516.8592.3178forward
CNT30278460Vigna angularisChenopodium quinoa25.9613.0296.381forward
CNT3070099Vigna angularisQuercus suber25.9614.5497.5381forward
CNT30404042Vigna angularisBeta vulgaris24.6816.0497.477forward
CNT30526086Vigna angularisPhaseolus vulgaris64.7437.8391.58202forward
CNT30631086Vigna angularisVigna unguiculata69.5525.5994.47217forward
CNT30199009Vigna angularisPisum sativum24.3614.3198.6876forward
CNT30487554Vigna angularisOlea europaea24.6812.9896.177forward
CNT30506885Vigna angularisNicotiana attenuata26.2815.1395.1282forward
CNT30711470Vigna angularisGlycine max43.9124.3389.05137forward
CNT3046844Vigna angularisPrunus dulcis24.3614.9994.7476forward
CNT30165232Vigna angularisPistacia vera24.684.3894.8177forward
CNT30638745Vigna angularisCapsicum annuum26.2816.1198.7882forward
CNT3094527Vigna angularisSolanum tuberosum26.2815.7196.3482forward
CNT30307634Vigna angularisTriticum aestivum25.3212.3693.6779forward
CNT30399552Vigna angularisTriticum turgidum25.3212.4293.6779forward
CNT30562614Vigna angularisActinidia chinensis24.3612.9394.7476forward
CNT3085655Vigna angularisVigna radiata70.5145.9396.36220forward
CNT30233654Vigna angularisBrassica oleracea26.2817.0592.6882forward
CNT30172276Vigna angularisTrifolium pratense24.3615.796.0576forward
CNT30145007Vigna angularisMedicago truncatula22.4411.7898.5770forward
CNT30242945Vigna angularisAvena sativa24.3611.4692.1176forward
CNT30313662Vigna angularisCamelina sativa24.3616.5296.0576forward
CNT3060340Vigna angularisArabidopsis lyrata24.6815.6594.8177forward
CNT3073498Vigna angularisBrassica juncea26.2813.2793.982forward
CNT30260384Vigna angularisBrassica rapa26.287.3693.982forward
CNT30612193Vigna angularisArabis alpina24.6817.2393.5177forward
CNT30601041Vigna angularisFraxinus excelsior25.3214.1696.279forward
CNT30468162Vigna angularisSaccharum spontaneum25.3210.7994.9479forward
CNT30132841Vigna angularisLolium perenne24.3614.6292.1176forward
CNT30610456Vigna angularisGossypium raimondii25.968.7196.381forward
CNT30652772Vigna angularisRosa chinensis24.6812.9497.477forward
CNT30213082Vigna angularisHelianthus annuus25.9618.0493.8381forward
CNT30715353Vigna angularisMalus domestica golden25.646.5196.2580forward
CNT30626608Vigna angularisDaucus carota24.368.9494.7476forward
CNT30722856Vigna angularisTriticum spelta25.3218.6893.6779forward
CNT30348900Vigna angularisEragrostis tef24.3616.3892.1176forward
CNT30478095Vigna angularisArabidopsis halleri24.6818.1694.8177forward
CNT30619791Vigna angularisCajanus cajan44.2352.4789.86138forward
CNT30596688Vigna angularisOryza meridionalis25.3214.6694.9479forward
CNT30355299Vigna angularisLactuca sativa25.9611.6593.8381forward
CNT30153721Vigna angularisPrunus persica24.3615.4296.0576forward
CNT30424191Vigna angularisPapaver somniferum25.6417.5897.580forward
CNT30704989Vigna angularisPrunus avium25.9610.6496.381forward
CNT30642554Vigna angularisCannabis sativa26.2814.2195.1282forward
CNT3057178Vigna angularisAmborella trichopoda24.3613.1792.1176reverse complement
CNT30320568Vigna angularisAsparagus officinalis24.3612.593.4276forward
CNT30120214Vigna angularisCitrus clementina25.9615.7996.381forward
CNT30584684Vigna angularisEchinochloa crusgalli25.3216.5393.6779forward
CNT30499031Vigna angularisDigitaria exilis24.3614.2192.1176forward
CNT30593864Vigna angularisEragrostis curvula24.3613.6292.1176forward
CNT30604511Vigna angularisOryza punctata25.3215.1693.6779forward
CNT30556718Vigna angularisPanicum hallii24.3616.9692.1176forward
CNT30112246Vigna angularisFicus carica25.9614.5295.0681forward
CNT30725701Vigna angularisLupinus angustifolius24.684.6796.177forward
CNT3050740Vigna angularisCucumis sativus26.2812.4293.982forward
CNT30115231Vigna angularisEutrema salsugineum25.9621.9593.8381forward

Expression of CNT30175528

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRAKWKKKRMRRLKRKRRKMRQRSKCIVVWW*

>peptide 2 (29 aa)
MFCLLSPLPLLSSNRLGFGFEEELGVCSP*

Sequence

>CNT30175528
TTAAGGATGCATTCAGGCTGGGCCTTTAGTTAGAGCCCAATACTTCCTAGGGTTTCTTGTAGGCTATAAATTGCAGCATCATTATCATGTTTTGTCTTCT
TAGTCCTCTGCCACTTCTCAGCAGCAATCGGCTAGGGTTCGGATTTGAAGAAGAGTTGGGAGTTTGTTCACCATGAGGGCCAAGTGGAAGAAGAAGCGTA
TGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTGCATCGTGGTTTGGTGGTAAAACAGAGCTGGAAGAACTATATATGCATAAAA
ATTGAGTTTATT