« Back to Saccharum spontaneum search


Detailed information on CNT30468162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Saccharum spontaneumEucalyptus grandis11.0724.9297.5381forward
CNT30317675Saccharum spontaneumCorylus avellana8.8824.1696.9265forward
CNT30549577Saccharum spontaneumIpomoea triloba10.5221.5194.8177reverse complement
CNT30514313Saccharum spontaneumJuglans regia10.9321.399580forward
CNT30701352Saccharum spontaneumQuercus lobata10.9320.29580forward
CNT30376000Saccharum spontaneumArabidopsis thaliana10.9321.3992.580forward
CNT3071712Saccharum spontaneumQuercus suber10.9320.159580forward
CNT30506884Saccharum spontaneumNicotiana attenuata10.1129.7295.9574forward
CNT30191267Saccharum spontaneumSecale cereale11.8925.5996.5587forward
CNT3011623Saccharum spontaneumZea mays12.1622.0393.2689reverse complement
CNT3067939Saccharum spontaneumLeersia perrieri8.8822.5798.4665reverse complement
CNT30126894Saccharum spontaneumCorymbia citriodora11.0722.4495.0681forward
CNT30722856Saccharum spontaneumTriticum spelta12.4321.5197.891forward
CNT30348933Saccharum spontaneumEragrostis tef12.5724.3495.6592forward
CNT30619791Saccharum spontaneumCajanus cajan10.7930.0494.9479forward
CNT30572709Saccharum spontaneumVitis vinifera10.9327.039580forward
CNT30704991Saccharum spontaneumPrunus avium10.9325.8996.2580forward
CNT3024248Saccharum spontaneumPopulus trichocarpa10.9325.089580forward
CNT30584684Saccharum spontaneumEchinochloa crusgalli56.5686.6186.23414forward
CNT30604511Saccharum spontaneumOryza punctata17.0823.9995.2125forward
CNT30175528Saccharum spontaneumVigna angularis10.7925.3294.9479forward
CNT30725207Saccharum spontaneumLupinus angustifolius10.6621.6794.8778forward

Expression of CNT30468162

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PSAAAILPFPSPIVNPPPTPQEETRQGEHARRRP*

>peptide 2 (44 aa)
MVAVMACLCTYISSDVFANGEMSTWHGVTVRHQSNGLSRKPALQ*

>peptide 3 (58 aa)
VSRRHPPIPLPYREPAADAAGGDAPRRAREEATMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 4 (39 aa)
MQFRALCCSKSVLSKLMLTVPRGDFLLRSIVWDASVVSL*

>peptide 5 (35 aa)
MCLLMERCQPGMVSQFAISRMACLGNLHFNRLSWF*

Sequence

>CNT30468162
CCGTCAGCCGCCGCCATCCTCCCATTCCCCTCCCCTATCGTGAACCCGCCGCCGACGCCGCAGGAGGAGACGCGCCAAGGAGAGCACGCGAGGAGGCGAC
CATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAAGCTGATGGAGATGGATGGTGG
CCGTGATGGCATGCTTGTGTACATACATTTCTTCGGATGTGTTTGCTAATGGAGAGATGTCAACCTGGCATGGTGTCACAGTTCGCCATCAGTCGAATGG
CTTGTCTCGGAAACCTGCACTTCAATAGGCTATCGTGGTTCTAGTTATATCCAGAGTTTTGCACTAAGACAAATCAGTCTGTCTGTTTTGTGAACCTAAT
ATGATGGAGCTTTATTGCTCCTAATATCTACCTACCTATTAAGTAATTCCTGTTAATTCCTGTGTTTGTGTTTGTGCTTGGTTGCTCTTTCATTGTGTTA
TCGTGGTATCTGTGCTGGTTTATCTGGCCTGTTTCTCTTAATTATTAGAGAAACAGTGCTGCTTGTCATGTTGTCACCCATCTGAAGCTGGGTGATGTAG
CATATGCAGTTTCGAGCCTTGTGTTGTTCCAAGAGTGTCCTATCCAAGCTGATGTTAACTGTACCGCGAGGTGATTTTCTTTTGCGATCGATTGTTTGGG
ATGCCTCTGTAGTCAGTCTGTAGCTAAGGTCA