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Detailed information on CNT30172276


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Trifolium pratenseCorylus avellana12.8123.0598.3962forward
CNT30549577Trifolium pratenseIpomoea triloba17.5623.7495.2985reverse complement
CNT30514313Trifolium pratenseJuglans regia16.3221.1296.279forward
CNT30376000Trifolium pratenseArabidopsis thaliana16.1220.8693.5978forward
CNT30506884Trifolium pratenseNicotiana attenuata15.530.1298.6775forward
CNT30236394Trifolium pratenseBrassica oleracea16.1221.0894.8778forward
CNT30309894Trifolium pratenseCamelina sativa16.5338.2893.7580forward
CNT3074476Trifolium pratenseBrassica juncea16.7420.7296.381forward
CNT30261820Trifolium pratenseBrassica rapa16.1224.9294.8778forward
CNT30605418Trifolium pratenseGossypium raimondii17.1529.3392.7783forward
CNT30219096Trifolium pratenseKalanchoe fedtschenkoi16.5322.7993.7580forward
CNT30619768Trifolium pratenseCajanus cajan16.1231.296.1578forward
CNT30429165Trifolium pratensePapaver somniferum16.3222.2594.9479forward
CNT30572709Trifolium pratenseVitis vinifera16.1226.3596.1578forward
CNT3024248Trifolium pratensePopulus trichocarpa15.9124.1496.177forward
CNT30175528Trifolium pratenseVigna angularis15.724.3696.0576forward
CNT30725207Trifolium pratenseLupinus angustifolius17.1523.0695.1883forward
CNT30115210Trifolium pratenseEutrema salsugineum15.9131.394.8177forward

Expression of CNT30172276

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDSLPWLRFHWTSSVTREDPASKHLQSCLMKIL*

Sequence

>CNT30172276
GTGAAAGTTCACCGAATTTGGGCCTTTTAGATTAAATAAAGCCCATTACGAGCTTAGGGTTTCTTATCTTCGCTATAAATTGCTGCAACCATGTCTCTCT
CATTTTCAGCTGCCATCAACAACTAGGGTTACGACAGCACCGTTCAAGATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCC
GAAAGATGAGACAGAGATCTAAGTAGACAGTTATTCTCACCGATCGTAGTTTGTTTCTTCAGCCTCTCTTGTTTGAAGCACCTGGAAATGGATTCCCTCC
CGTGGCTAAGATTTCACTGGACCTCTTCTGTTACTCGAGAGGATCCAGCCTCGAAGCACCTGCAAAGCTGCCTTATGAAAATTTTATAATTTTACAAGTT
TATGGTACTGCAAGTGATTCAAGTTCCTCCAATTGTGATACTTATTTAGGATGCTTATCTTTTTGTTTTATCAATTTTGCCATG