« Back to Eutrema salsugineum search


Detailed information on CNT30115231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376000Eutrema salsugineumArabidopsis thaliana22.4922.1993.9883forward
CNT30526086Eutrema salsugineumPhaseolus vulgaris22.7615.7394.0584forward
CNT30631133Eutrema salsugineumVigna unguiculata21.6812.593.7580forward
CNT30199009Eutrema salsugineumPisum sativum21.4114.8892.4179forward
CNT3043845Eutrema salsugineumPrunus dulcis20.0514.9291.8974forward
CNT3085655Eutrema salsugineumVigna radiata22.7617.5494.0584forward
CNT30249056Eutrema salsugineumAvena sativa21.1417.1189.7478forward
CNT30309275Eutrema salsugineumCamelina sativa21.6835.7196.2580forward
CNT3060537Eutrema salsugineumArabidopsis lyrata36.861392.65136forward
CNT3074694Eutrema salsugineumBrassica juncea28.4622.4492.38105forward
CNT30626608Eutrema salsugineumDaucus carota21.149.1891.0378forward
CNT30477439Eutrema salsugineumArabidopsis halleri20.3312.4298.6775forward
CNT30424191Eutrema salsugineumPapaver somniferum22.2218.0292.6882forward
CNT30642554Eutrema salsugineumCannabis sativa22.4914.3895.1883forward
CNT30320568Eutrema salsugineumAsparagus officinalis20.8712.6690.9177forward
CNT30499286Eutrema salsugineumDigitaria exilis21.1418.5789.7478forward
CNT30175528Eutrema salsugineumVigna angularis21.9525.9693.8381forward
CNT30723632Eutrema salsugineumLupinus angustifolius23.5814.7791.9587forward
CNT3050740Eutrema salsugineumCucumis sativus22.2212.4290.2482forward

Expression of CNT30115231

Peptides detected in this lncRNA

>peptide 1 (33 aa)
IKKQSGDSGKELFVLSAANFLRLHRFGVNSVKV*

Sequence

>CNT30115231
GTATAAAGAAGCAATCTGGTGATAGCGGCAAAGAACTTTTTGTTTTGTCGGCCGCTAATTTCCTGAGGCTGCATAGATTCGGAGTGAACTCAGTGAAGGT
TTAATCTTCTGTGATCTCACCATGAGGGCGAAGTGGAAGAAGAAGCGTATGAGGAGATTAAAGAGGAAGAGACGAAAGATGAGACAGCGATCCAAGTAGT
TTTGCGAACAAGCCTGGTTTTATGTTTCTTCGCTTTTAGAATCAAACTCTTTCGAGTTATAATTTGAATGTTTTGTTGGACGAAATTAGTAGACATTATT
ATGCTTTCTATTAAGAATTATGTTTAACACACGGAAAAATTCGCATGGGTTTCTTCTACATTACTCTTC