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Detailed information on CNT30715353


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Malus domestica goldenEucalyptus grandis6.5924.9298.7781forward
CNT30317675Malus domestica goldenCorylus avellana6.352993.5978forward
CNT30549577Malus domestica goldenIpomoea triloba6.3521.7996.1578reverse complement
CNT30514313Malus domestica goldenJuglans regia6.6721.9396.3482forward
CNT30701352Malus domestica goldenQuercus lobata6.6720.7196.3482forward
CNT30376000Malus domestica goldenArabidopsis thaliana6.7522.1993.9883forward
CNT3071712Malus domestica goldenQuercus suber6.6720.6596.3482forward
CNT30506884Malus domestica goldenNicotiana attenuata6.130.1297.3375forward
CNT3043845Malus domestica goldenPrunus dulcis15.0537.387.03185forward
CNT30538793Malus domestica goldenBrassica napus6.4320.4796.279forward
CNT30236394Malus domestica goldenBrassica oleracea6.6722.1692.6882forward
CNT30309894Malus domestica goldenCamelina sativa6.3537.3293.5978forward
CNT3074476Malus domestica goldenBrassica juncea6.7521.2393.9883forward
CNT30261820Malus domestica goldenBrassica rapa6.6726.292.6882forward
CNT30605418Malus domestica goldenGossypium raimondii6.6728.9892.6882forward
CNT30126894Malus domestica goldenCorymbia citriodora6.5122.1696.2580forward
CNT30619768Malus domestica goldenCajanus cajan6.5932.496.381forward
CNT30429165Malus domestica goldenPapaver somniferum6.7523.3892.7783forward
CNT30572709Malus domestica goldenVitis vinifera6.6727.796.3482forward
CNT30704991Malus domestica goldenPrunus avium9.0335.9295.5111forward
CNT3024248Malus domestica goldenPopulus trichocarpa6.5925.3996.381forward
CNT30175528Malus domestica goldenVigna angularis6.5125.6496.2580forward
CNT30725207Malus domestica goldenLupinus angustifolius6.4321.9496.279forward

Expression of CNT30715353

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRSSATSDDHLVVTFIFLLRSNSLHYLPYVLVAYEHQE*

>peptide 2 (36 aa)
MDVNENGAMTIGDSGLPSSNECDIANNCLSAELSCW*

>peptide 3 (29 aa)
LTLSSLSTNAEKPATHVTHHSDEVLRHQR*

>peptide 4 (84 aa)
MILLSIFLLSFKTRVWERTSFYRHHESQVEEEAHEEVEEEAPKDETEIQVVCSFAVTDHQSTSFRFRLHVLLSNQVISTPLVNL*

>peptide 5 (54 aa)
MGIYHNGILICQPPPQLLNFFRQRLRSSENPFKLKALVFSRPVNSQSTRTALIK*

>peptide 6 (40 aa)
MCSLHMNTKNKSSDHLTSRPRLYTEINSGKLLPRSPANSP*

Sequence

>CNT30715353
TCTAACTTTAAGCTCTCTTTCTACAAACGCAGAGAAACCGGCGACCCATGTAACTCACCACTCCGATGAGGTCCTCCGCCACCAGCGATGACCACCTCGT
TGTGACCTTCATCTTCCTCCTCCGTTCAAACTCTCTACACTATCTTCCCTATGTGCTCGTTGCATATGAACACCAAGAATAAATCCAGCGACCACCTCAC
TTCTCGACCTCGCTTATATACAGAAATCAACTCGGGAAAATTATTACCCAGATCTCCAGCGAACTCACCGTAGCTGCAAGCGTTTCTTGGCCATTTTCGA
CCATGGATGTGAATGAAAATGGTGCGATGACTATCGGAGACTCCGGCCTTCCTAGCTCGAACGAATGTGACATCGCAAATAACTGTTTAAGTGCTGAGCT
TTCGTGTTGGTGAAAATTGTTGGCAAATCTTGGTATACGTGGTTACCTTCGATGGGGATATACCACAATGGCATCCTAATCTGCCAGCCGCCTCCTCAAC
TCCTCAATTTTTTCCGTCAAAGGCTTCGATCCAGTGAAAATCCGTTTAAGCTAAAAGCATTGGTTTTTTCTCGGCCAGTCAACAGCCAGTCCACAAGAAC
AGCACTAATTAAGTGACGTGAGCAAGTATAGCCGTTGAACCTCACATGTGGGCTAGCTTATTTTGATAACATAAAGAAAGTTGAGATTCCACCATAAACT
AATTAGCAATATGGAGGTAGTCCAACCTCTTATAAACTCTAATAAGGTTTCTTTTTTCGTGGACATGACACTATTTTACCTTCAGATTCTCACATAATTG
TGGAGGTCAGACACGAGGGAGAAGGGAGAGAGAGACAACGATGAGTTAAAGTTTGGAGCCCCTCCCAAATATGATTCTTCTTTCCATATTCCTTCTATCT
TTCAAGACTAGGGTTTGGGAGCGAACGTCGTTTTACCGCCACCATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGGTTGAAGAGGAAGCGCCGAAAG
ATGAGACAGAGATCCAAGTAGTTTGCTCGTTCGCTGTCACCGATCATCAATCGACGTCGTTTCGCTTCCGTCTCCATGTTTTGTTGTCTAATCAAGTAAT
CAGTACCCCATTAGTGAACTTGTAGTCGTTTTGTACGCTTTGTGTTATCGTTTGGAACAAGTTTTGCTTTAATCAGTTCAGTCAGATAATTTATTTTTAT
ATCCTATAGCATCGGTGGCGATTTGGAAT