CANTATAdb - search

Detailed information on CNT30165232

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30376000	Pistacia vera	Arabidopsis thaliana	4.44	20.86	92.31	78	forward
CNT30506280	Pistacia vera	Nicotiana attenuata	4.49	26.78	94.94	79	forward
CNT30544783	Pistacia vera	Brassica napus	4.44	24.38	93.59	78	forward
CNT30236394	Pistacia vera	Brassica oleracea	4.44	21.08	93.59	78	forward
CNT30309275	Pistacia vera	Camelina sativa	4.44	34.82	91.03	78	forward
CNT3075181	Pistacia vera	Brassica juncea	4.44	21.37	93.59	78	forward
CNT30261820	Pistacia vera	Brassica rapa	4.44	24.92	93.59	78	forward
CNT30605418	Pistacia vera	Gossypium raimondii	4.44	27.56	93.59	78	forward
CNT30126894	Pistacia vera	Corymbia citriodora	4.55	22.16	95	80	forward
CNT30620847	Pistacia vera	Cajanus cajan	4.38	21.51	96.1	77	forward
CNT30429165	Pistacia vera	Papaver somniferum	4.44	21.97	96.15	78	forward
CNT30175528	Pistacia vera	Vigna angularis	4.38	24.68	94.81	77	forward
CNT30115210	Pistacia vera	Eutrema salsugineum	4.55	32.52	93.75	80	forward

Expression of CNT30165232

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAASGSKLSNQVSSCLCFSVTLWFMLSRM*

>peptide 2 (37 aa)
MNMKFCLLIYQVFLYLHISHTKTATELFCNKDKRVYL*

>peptide 3 (51 aa)
MDLLTIASWEPGILQPVIYPLTPDFLSYHTLHDVQETRYSISTTPLSSFPS*

>peptide 4 (31 aa)
MMFKKQDTPSPPHPCPHSLHSLHFLFTSLFVL

>peptide 5 (33 aa)
MFQVLYKALIKSTYYNEYEVLFIDIPSIFVPAY*

>peptide 6 (82 aa)
PNQKMSRAQISILTASLSRVLHINMRKALKSKVSHHQRSLLEQLGFWSEDLSLVTCHMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30165232
GCCCAATCAGAAAATGAGTCGGGCCCAAATTTCGATTTTGACCGCCAGTCTTTCTAGGGTTTTACATATAAATATGCGCAAAGCCCTAAAATCCAAAGTT
TCACATCATCAGCGCAGCCTCTTGGAGCAACTAGGGTTTTGGAGTGAAGACCTAAGTTTGGTAACCTGTCACATGAGAGCTAAGTGGAAGAAGAAGCGTA
TGAGAAGATTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAAGTAAAGTCTTCTCTAGTGCGGCGCTTTTTGTCATTTCTTGCTGCTTTTTTTGTT
GAGTCGATTAAGTAGTGATATCTGTTTTTGATTTTATGTTTTGATACATTTTGTTGAATTAAGTGAACGCCATTATTTAACTTGAAATGGGATTATCTTT
TGCTTATCTAGCTCTTTATTGCCTTCCAAATCTATTGTTACCATTATAATCCATTGATTAGCTATCTGTGTGAATGTCAATTTTATGAATTATTCTATTT
AGTTGAGCTTCTGGGATCTAGAATCATGGTTACTGGAGCTTCTGATGGATAAGCATTTTCATGGAAGGTAAATGAAGTTTTATTATAGCTTATTATGTTG
GTTGCTTGCCTGTTATTCGTGAAGTTCAAGCTGTGGGAAATGGGGATTTAGGTTTACCTCTTTGTTTTGTCATGGGTTAAAGTAATGGGAAATAAGAGAT
TTAGGGTTTGTGATTCCTTAAATTAAGTGAAATCATTTAGTGTTTTATGTAGTATATTGCTCATCCTTGGGGGGTTCAGTCTTATTCTTTGTATTTTGAA
TTGCCCTTCACCTTGAAGCTTTAGTATCTGAGGAGTTAAATTAGTCTGGAAGGGTTTTGCTTCAGTGCCACTGATAGATGGCCGCTTCTGGTTCTAAACT
CTCAAATCAGGTCAGTTCATGCTTGTGCTTCTCAGTGACACTCTGGTTCATGCTTTCTAGAATGTGAATGCTTAATTGTAGTTTGGTGTAGATCGCCGGC
TTGATGTAAAATAATTGAATGGTGAATGGTCATTTATTAGCAGAATGTTTCAGGTTTTGTATAAAGCTTTGATAAAATCAACGTATTACAATGAATATGA
AGTTTTGTTTATTGATATACCAAGTATTTTTGTACCTGCATATTAGCCATACTAAAACAGCGACTGAATTATTTTGTAACAAAGATAAAAGAGTATATTT
GTGATTAAATTAACTGAATTTTATATGTTCCCAAGTGCTTCCATTTGGGTAACCATGTCAGAAGTGATTCGTAACAAGAGGCAGGAATTTTACATATTTT
GAGCCTTCAGTTCCGATCAGAGTACTGATCACCTGGTAACACCATTGAGCCTAACACAATTTGTAGACGTTTTAAAGGCTAAAAGCTGATGTTTCACTCT
TAAACTAAAAGGGGAAACACGAATCTAAGGCCAAAACTATGCTAAAATCTGCAACTCCTAATCAGAACTAGTAGTAGTGAAAATTTGATTGCCCAGAGCA
GAGTCACAGTCAAAAGAAGCAACAGAGAAAAAAAAAAAAAAAAAAAAAGGAAGCTGAAAATTCTTTATGGATCTTTTGACCATCGCTAGCTGGGAGCCTG
GGATCCTTCAGCCCGTAATTTATCCACTAACTCCTGACTTCCTCAGCTATCATACGCTGCATGATGTTCAAGAAACAAGATACTCCATCTCCACCACACC
CCTGTCCTCATTCCCTTCATAGTCTTCACTTCCTTTTCACCTCCCTCTTTGTTCTTTT