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Detailed information on CNT3060340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Arabidopsis lyrataOryza sativa16.2620.0591.2580forward
CNT30533222Arabidopsis lyrataEucalyptus grandis15.852492.3178forward
CNT30514313Arabidopsis lyrataJuglans regia16.0621.1294.9479forward
CNT30376000Arabidopsis lyrataArabidopsis thaliana32.1142.2589.87158forward
CNT30506280Arabidopsis lyrataNicotiana attenuata15.6526.194.8177forward
CNT30191267Arabidopsis lyrataSecale cereale16.0623.2492.4179forward
CNT30224947Arabidopsis lyrataHordeum vulgare15.8526.5392.3178forward
CNT30395161Arabidopsis lyrataTriticum turgidum15.8521.9192.3178forward
CNT30309894Arabidopsis lyrataCamelina sativa15.8537.3294.8778forward
CNT30605418Arabidopsis lyrataGossypium raimondii16.0627.9291.1479forward
CNT30219096Arabidopsis lyrataKalanchoe fedtschenkoi15.8522.2292.3178forward
CNT30126894Arabidopsis lyrataCorymbia citriodora15.8521.6192.3178forward
CNT30721855Arabidopsis lyrataTriticum spelta15.8520.5392.3178forward
CNT30619768Arabidopsis lyrataCajanus cajan16.263297.580forward
CNT30704991Arabidopsis lyrataPrunus avium16.2625.8993.7580forward
CNT3024248Arabidopsis lyrataPopulus trichocarpa15.8524.4592.3178forward
CNT30175528Arabidopsis lyrataVigna angularis15.6524.6894.8177forward
CNT30725207Arabidopsis lyrataLupinus angustifolius16.0621.9494.9479forward

Expression of CNT3060340

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LCTTSLGLQFLGPFEISGPYQNLARENGKP*

>peptide 2 (34 aa)
MHFWQNRYLFLSISLLQSVIYMLCLFECRDCSYR*

Sequence

>CNT3060340
CTGTGTACCACATCTTTGGGCCTTCAATTTTTAGGCCCATTTGAAATATCAGGGCCTTATCAGAATTTAGCAAGGGAAAACGGAAAACCCTAGCTATATA
TTTTGGAGACTCTCCTCGTAAGTGGAGAGAACGGCGAACGAAGCATCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGACTAAAGAGGAAGCGCCG
AAAGATGAGACAGCGATCCAAGTAGTCCATTCCATTGTGGATGTGTCTTATTTCTAGTTTCTTGCCTTCTTGAATCAGTTTTTGAACCTTTTGTGACTTT
TTGCATTTAATCTTGAACAATCATCCGAGTCTGTATTCAGAATTTGGTTCACTCCTTTATCTACTAGATGCATTTCTGGCAAAACAGATATTTGTTTTTG
AGTATTTCATTACTTCAGTCTGTTATATATATGTTGTGTTTATTTGAGTGTAGAGATTGTAGTTATCGTTAGCTCTTAGAACATGCATCCAG