Detailed information on CNT30701463


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Quercus lobataEucalyptus grandis15.8925.2397.5682forward
CNT30317675Quercus lobataCorylus avellana15.529.749580forward
CNT30549577Quercus lobataIpomoea triloba15.1221.7997.4478reverse complement
CNT30514313Quercus lobataJuglans regia16.0922.1997.5983forward
CNT3070099Quercus lobataQuercus suber47.8744.3494.33247forward
CNT30309894Quercus lobataCamelina sativa15.1237.3294.8778forward
CNT30605418Quercus lobataGossypium raimondii16.4730.0494.1285forward
CNT30126894Quercus lobataCorymbia citriodora15.522.169580forward
CNT30572709Quercus lobataVitis vinifera16.2828.3897.6284forward
CNT30704991Quercus lobataPrunus avium16.0926.8698.883forward
CNT3024248Quercus lobataPopulus trichocarpa15.8925.7197.5682forward
CNT30175528Quercus lobataVigna angularis15.725.9697.5381forward

Expression of CNT30701463

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RSPILFLSPKSRRPHIRVSSVLPINTLNASNLKEPL*

Sequence

>CNT30701463
CAGAAGCCCAATACTGTTCTTAAGCCCAAAATCTCGCCGACCACACATTAGGGTTTCCTCTGTACTCCCTATAAATACTCTCAACGCCTCTAACCTCAAA
GAACCTCTCTAGAAAATTGCTTTCTCGGCAGCCTTGTCTGGACAACTAGGGTTTTGAAGCGAACTTAGCCACCGCATCACCATCACCATGAGAGCCAAGT
GGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGATTTATTATTATCATTATTATTATTAAGTCGGTGT
CGTTTTGTTTTCTAATCGGATGTTGATTAGAGTCGTTAGTGTCTTTTTGTTTTCCTATGTTTGGATAAATTTCTAAGAAATGGATTTTTGTACTGTTTAA
TGAGATTTTTCGTATTTAACTTTTAATGTTTTTATATGGTTATAGTTATGTGGAAACTTGTCCTTTTATATTTGAATGTCGTTTTGATTAGATATTCCAA
GTTTATTTATATCCCT