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Detailed information on CNT30112246


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Ficus caricaCorylus avellana14.1629.3793.6779forward
CNT30549577Ficus caricaIpomoea triloba13.9821.7997.4478reverse complement
CNT30514313Ficus caricaJuglans regia15.0522.4695.2484forward
CNT30701352Ficus caricaQuercus lobata14.8720.9695.1883forward
CNT30376000Ficus caricaArabidopsis thaliana14.8722.1992.7783forward
CNT3071712Ficus caricaQuercus suber14.8720.9195.1883forward
CNT30542653Ficus caricaBrassica napus14.5220.7293.8381forward
CNT30236394Ficus caricaBrassica oleracea14.5221.8993.8381forward
CNT30309894Ficus caricaCamelina sativa13.9837.3292.3178forward
CNT3075181Ficus caricaBrassica juncea14.5222.1993.8381forward
CNT30261820Ficus caricaBrassica rapa14.5225.8893.8381forward
CNT30605418Ficus caricaGossypium raimondii14.8729.3393.9883forward
CNT30126894Ficus caricaCorymbia citriodora14.3422.169580forward
CNT30620847Ficus caricaCajanus cajan15.0523.4695.2484forward
CNT30429165Ficus caricaPapaver somniferum14.723.193.982forward
CNT30572709Ficus caricaVitis vinifera14.8728.0497.5983forward
CNT30704991Ficus caricaPrunus avium15.9528.896.6389forward
CNT3024248Ficus caricaPopulus trichocarpa14.8726.0295.1883forward
CNT30175528Ficus caricaVigna angularis14.5225.9695.0681forward
CNT30725207Ficus caricaLupinus angustifolius14.1621.9496.279forward
CNT30115210Ficus caricaEutrema salsugineum13.9831.7193.5978forward

Expression of CNT30112246

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MSNSGFLVGQVSFNFSLFVDLIIIVIIIMRYETVFFNYIACSFDFHGSLMVFV*

Sequence

>CNT30112246
TATCTCAGTAAGCCCATTTGAGACTCTAAAAATTGGGCCATCCAAGGGCCCAACTGGCTAAACACCCAAAGTCGGTTTCGAAGTGTACATTAGGGTTTCT
AAGCTCGACCTATAAATACCAGGCAAAGCCACTGAAAGCAAACCCTTGCACTCACATTCTCAGCAGACTCGGCCTTCCTCTGTGCATCTAGGGTTTTGAA
GCTAACTCCGGCGAATCGTCACCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGACAGAGATCCAAGTA
GTTCTTTTAATAATGAATCAGCGTCTGTTTTTCTTTAATCTCCCGTTTGTTTTGACTGTTCTCGTTACCTAATTAGTACCGATTAATGAGTAATAGTGGT
TTTCTAGTCGGACAAGTTTCTTTTAATTTCAGTCTGTTTGTAGACCTTATTATTATTGTCATTATTATTATGAGATATGAAACCGTTTTCTTCAACTATA
TAGCCTGTTCTTTTGATTTTCATGGTTCTCTTATGGTTTTTGTTTAATGGGGTTTTGG