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Detailed information on CNT30642554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Cannabis sativaIpomoea triloba14.2122.9192.6882reverse complement
CNT30514313Cannabis sativaJuglans regia14.5622.4692.8684forward
CNT30701352Cannabis sativaQuercus lobata14.5621.2192.8684forward
CNT30376000Cannabis sativaArabidopsis thaliana14.2121.9397.5682forward
CNT3071712Cannabis sativaQuercus suber14.5621.1692.8684forward
CNT30506280Cannabis sativaNicotiana attenuata13.3426.194.8177forward
CNT30191267Cannabis sativaSecale cereale14.0423.8292.5981forward
CNT30224947Cannabis sativaHordeum vulgare13.5226.5392.3178forward
CNT30395161Cannabis sativaTriticum turgidum13.5221.9192.3178forward
CNT30542653Cannabis sativaBrassica napus13.6920.291.1479forward
CNT30236394Cannabis sativaBrassica oleracea14.5622.790.4884forward
CNT30309894Cannabis sativaCamelina sativa13.6937.894.9479forward
CNT3059857Cannabis sativaArabidopsis lyrata11.4420.2593.9466forward
CNT3074476Cannabis sativaBrassica juncea14.3821.2390.3683forward
CNT30260341Cannabis sativaBrassica rapa14.2120.692.6882forward
CNT30126894Cannabis sativaCorymbia citriodora13.8622.1692.580forward
CNT30721855Cannabis sativaTriticum spelta13.5220.5392.3178forward
CNT30619768Cannabis sativaCajanus cajan13.86329580forward
CNT30429165Cannabis sativaPapaver somniferum14.3823.3893.9883forward
CNT30572709Cannabis sativaVitis vinifera14.3828.0492.7783forward
CNT30704991Cannabis sativaPrunus avium19.9337.2290.43115forward
CNT30175528Cannabis sativaVigna angularis14.2126.2895.1282forward
CNT30725207Cannabis sativaLupinus angustifolius13.6921.9493.6779forward
CNT30115231Cannabis sativaEutrema salsugineum14.3822.4995.1883forward

Expression of CNT30642554

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSLVYAEITHFSSRILFVLETRLLVVLDELVCKFGTL*

Sequence

>CNT30642554
TGTCATTAGGGTTTCTTTTCTTGACCTATAAATATTTCCGAGGCCTCACAGCATAACCCCTCGCGTCACATTTGGTTTCTCGGCAGACCTATCTTTCTTC
TGAAACTCTAGGGTTTGGAAGCGAACTTCGTGTCATCTTCACCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGACTAAAGAGGAAGCGCCGAAAG
ATGAGACAGCGATCCAAGTAGATTTCTTAATAAAGAACCATGTTGAGTCGTGTTGATTTTTACGAGAATTTCGAGCCTCTTCTGGGTTCTAAGCTGTATT
TAGTTCGAAGTTGAAAATTTCAATCTTGGGTCTTGTTTCTATTAAACCTATAGTTTAATGGTGGCAAGTAGTAGACGAATATTTTAGAGTTTGTTTGAGT
TGAGATTATAGTGGCAAGTTTAATATAGTTTTGTTGAATGAGCTTAGTCTATGCCGAGATAACTCACTTCTCAAGCCGTATCTTGTTTGTTTTGGAAACA
CGTCTGTTGGTAGTTTTGGATGAACTTGTTTGCAAATTTGGCACTCTTTAATATTTTGATGTAAACTGAAGCTCTGT