Detailed information on CNT30612193


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506280Arabis alpinaNicotiana attenuata17.2326.193.5177forward
CNT30309275Arabis alpinaCamelina sativa17.6735.2797.4779forward
CNT3060537Arabis alpinaArabidopsis lyrata26.1711.1995.73117forward
CNT3081700Arabis alpinaBrassica juncea24.3823.995.41109forward
CNT30429165Arabis alpinaPapaver somniferum17.6722.2594.9479forward
CNT30175528Arabis alpinaVigna angularis17.2324.6893.5177forward

Expression of CNT30612193

Peptides detected in this lncRNA

>peptide 1 (69 aa)
FYCSCHIKKQQEQVHQNLSVWRLLHSCKLHRNPRSEGFIFCESIMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (40 aa)
MFRWTMFNRFYVFLLRIMFITLGSLLYFSYIVIYNLRNDN*

Sequence

>CNT30612193
GTTTTATTGTAGCTGTCATATAAAGAAGCAACAAGAGCAAGTCCATCAAAATCTCTCTGTTTGGCGGCTGCTTCATTCCTGCAAACTCCATAGAAATCCG
AGGAGTGAAGGGTTTATCTTCTGTGAATCGATCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGATTGAAGAGGAAGAGACGAAAGATGAGACAGC
GATCTAAGTAGTTCCGAATAAAACTTTGTTTTTGTGTTTCTTCGTTTCTAAGTTAAACCAACTCTGTTTTACGAGTTTTGAGTTGAATGTTTCGTTGGAC
CATGTTTAATAGATTCTATGTTTTTCTATTAAGAATTATGTTTATCACATTGGGTTCTTTGTTATATTTCTCTTATATTGTTATATACAATCTGCGTAAT
GATAATTGAGATGCTCTTAAGTTAGATTATGCTTTAAAAGCCTTTAG