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Detailed information on CNT30601041


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Fraxinus excelsiorEucalyptus grandis14.3424.6297.580forward
CNT30317675Fraxinus excelsiorCorylus avellana11.6524.1696.9265forward
CNT30549577Fraxinus excelsiorIpomoea triloba13.9821.7996.1578reverse complement
CNT30514313Fraxinus excelsiorJuglans regia14.5221.6698.7781forward
CNT30701352Fraxinus excelsiorQuercus lobata14.5220.4593.8381forward
CNT30376000Fraxinus excelsiorArabidopsis thaliana14.721.9393.982forward
CNT3071712Fraxinus excelsiorQuercus suber14.5220.493.8381forward
CNT30491017Fraxinus excelsiorOlea europaea70.0767.8890.54391forward
CNT30506884Fraxinus excelsiorNicotiana attenuata13.2629.7297.374forward
CNT30191267Fraxinus excelsiorSecale cereale14.5223.8292.5981forward
CNT30224947Fraxinus excelsiorHordeum vulgare13.9826.5392.3178forward
CNT30395161Fraxinus excelsiorTriticum turgidum13.9821.9192.3178forward
CNT30538793Fraxinus excelsiorBrassica napus14.1620.4794.9479forward
CNT30605418Fraxinus excelsiorGossypium raimondii14.5228.6295.0681forward
CNT30219096Fraxinus excelsiorKalanchoe fedtschenkoi13.9822.2296.1578forward
CNT30126894Fraxinus excelsiorCorymbia citriodora14.3422.1697.580forward
CNT30721855Fraxinus excelsiorTriticum spelta13.9820.5392.3178forward
CNT30619768Fraxinus excelsiorCajanus cajan14.5232.496.381forward
CNT30572709Fraxinus excelsiorVitis vinifera14.5227.3696.381forward
CNT30704991Fraxinus excelsiorPrunus avium14.8726.8696.3983forward
CNT3024248Fraxinus excelsiorPopulus trichocarpa14.3425.0896.2580forward
CNT30175528Fraxinus excelsiorVigna angularis14.1625.3296.279forward

Expression of CNT30601041

Peptides detected in this lncRNA

>peptide 1 (65 aa)
GLRFTINTVRTLVNVSLSPLPNFLSSKVLRRHRVLFISLTMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30601041
ATGGGCTAAGGTTCACTATAAATACTGTAAGAACCCTAGTAAATGTCTCGTTATCTCCCCTTCCCAATTTTCTATCTTCTAAGGTTCTAAGGAGGCATCG
AGTCTTATTTATCTCCCTAACCATGAGAGCCAAGTGGAAGAAGAAGCGGATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAG
TTCCTGTCCCTGAATTTCCCGAGCATCGATCACTTTGGCTCTTTTTAAGGGTTTCTTATTTTCATTGTTGTTTCGATTTCGTTAATTTCAATCTGTTTTA
GTACTCTAGTACATTTTGGCGCTGCATTTGTAATCCTAGTATCCAATCCACGGATAGTTTAATGATTTTGATATATCATTTCAATTTAATTTTCTGTATT
AATGTGCTTTACTCATTTTTTTTTTTTTTTAAATTATGAGTATTACAGATTCCTTATGCTTACAGACTATAACTTGGATTTCTTATAGTTGAATGTGAGT
TATGTGTAACCATTTTCCTGACATATTATTTTGGTTAGTTAACATTAAAATCAGATCA