« Back to Rosa chinensis search


Detailed information on CNT30652772


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Rosa chinensisCorylus avellana10.4223.0598.3962forward
CNT30549577Rosa chinensisIpomoea triloba13.1121.7994.8778reverse complement
CNT30514313Rosa chinensisJuglans regia13.2821.1297.4779forward
CNT30376000Rosa chinensisArabidopsis thaliana13.2821.1292.4179forward
CNT30538793Rosa chinensisBrassica napus13.1120.2193.5978forward
CNT30309894Rosa chinensisCamelina sativa13.1137.3292.3178forward
CNT30605418Rosa chinensisGossypium raimondii13.2827.9293.6779forward
CNT30219096Rosa chinensisKalanchoe fedtschenkoi13.1122.2292.3178forward
CNT30126894Rosa chinensisCorymbia citriodora13.1121.6194.8778forward
CNT30619768Rosa chinensisCajanus cajan13.2831.694.9479forward
CNT30429165Rosa chinensisPapaver somniferum13.2822.2594.9479forward
CNT30572709Rosa chinensisVitis vinifera13.6127.3695.0681forward
CNT30175528Rosa chinensisVigna angularis12.9424.6897.477forward
CNT30725207Rosa chinensisLupinus angustifolius13.7822.7892.6882forward

Expression of CNT30652772

Peptides detected in this lncRNA

>peptide 1 (74 aa)
SSDSSKPFGELRRRFEVAPPFPTQHEGQVEEEAYEEIEEEAPKDEAEIEVGTFGVSICIKLLVEFCRLEPVGCL*

>peptide 2 (29 aa)
MRCCAYQPLRTYKNFYWKFKELVMYIIFKF

>peptide 3 (29 aa)
MDLMMLKLSVFNLSYYGLRVLMVPSFYCS*

Sequence

>CNT30652772
TCTTCAGACTCATCAAAACCCTTTGGAGAGCTCCGCCGTCGTTTTGAAGTAGCACCACCTTTCCCCACCCAACATGAGGGCCAAGTGGAAGAAGAAGCGT
ATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGGCACCTTTGGGGTCTCAATCTGCATCAAGCTTCTGGTGGAGTTTTGTAG
ACTGGAGCCTGTAGGATGTTTATGAGTGATTAATTCCTTTCTCTCGTAGATTGGGATTATGACTATCTTATGTTATGTTTTAAATTTCAAGTCTTTTAAT
TGTGTGTTTGGAACTTAATGGCCCTACTAGTTTTATCGAGTTTTTATGCAACTTCATGGATCTTATGATGCTCAAGCTTTCGGTTTTTAATTTATCATAT
TATGGGTTGCGTGTTCTTATGGTTCCAAGCTTTTATTGTAGTTGATTTATGATGTTGTTGGTGGGATTATGTTACCTGTTGAAGTTTAGATCTTTTAATA
GCTCATGAGATGTTGTGCATACCAGCCTCTTAGAACTTATAAGAACTTTTATTGGAAATTCAAAGAACTTGTGATGTACATCATCTTCAAATTTA