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Detailed information on CNT30374620


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 1e-45

BLAST vs NONCODE:
NONATHT001609, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Arabidopsis thalianaSetaria viridis28.4131.7486.59246forward
CNT30639623Arabidopsis thalianaNymphaea colorata28.9848.1882.87251forward
CNT30698521Arabidopsis thalianaQuercus lobata16.425.3185.21142forward
CNT30381493Arabidopsis thalianaManihot esculenta32.7937.9284.51284forward
CNT30146819Arabidopsis thalianaMedicago truncatula33.1438.2283.28287forward
CNT30471290Arabidopsis thalianaSaccharum spontaneum30.8329.7386.89267forward
CNT30608385Arabidopsis thalianaGossypium raimondii17.5527.6485.53152forward
CNT30349162Arabidopsis thalianaEragrostis tef31.4129.8687.5272forward
CNT30620815Arabidopsis thalianaCajanus cajan20.4424.2186.44177forward
CNT30429132Arabidopsis thalianaPapaver somniferum35.6819.4885.11309forward
CNT30331991Arabidopsis thalianaDioscorea rotundata11.4320.9386.8799forward

Expression of CNT30374620

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNRWPVFAKTNVNGDNAEAFFIQSFAIIMV*

>peptide 2 (71 aa)
MSTPTTISVNDDLPPCKSSITMRPSDDKTTRWVQVKDGVIVKVLSRDNRLDHMLLQVSSNLIIGDSFVMLS*

>peptide 3 (53 aa)
MAIRSGFLEPEVTSPLKVKVNGHHSRPEVKCFLDQHKDILVWDGPGLVGVNKH*

>peptide 4 (42 aa)
GYTIKITIQEIKREKKKKNKKEAKIQNIKLKSFICNLRLPDI*

>peptide 5 (33 aa)
MVLSSRYLAGITGLITCSFKSAAISSLVTVSSC*

Sequence

>CNT30374620
TGGTTACACAATCAAAATTACAATACAAGAGATTAAGAGGGAAAAGAAAAAGAAAAATAAAAAAGAGGCAAAAATTCAAAACATAAAACTCAAATCTTTC
ATTTGCAATCTTCGATTACCAGATATATGAACCGCTGGCCTGTGTTCGCGAAAACAAATGTGAATGGTGACAATGCAGAAGCTTTCTTTATTCAGTCATT
TGCAATAATAATGGTATAATGATAAGTTCCCAGTAGTTGGGGAGTGACTCAACTCAGTTCTTGCAATTGCCAGCTTTGTTTCTGTCTAGGCCTTTGGCTT
GAGCGGCTTGACAACCTCCCAAGTGAAGTCAGGGTCATCACGCCCGAAATGGCCATACGCAGCGGTTTTCTGGAACCTGAAGTTACCTCCCCTCTTAAGG
TCAAGGTTAATGGCCATCATTCCCGGCCTGAAGTCAAATGCTTCCTTGATCAACACAAGGATATCCTTGTCTGGGATGGTCCCGGTCTTGTAGGTGTCAA
CAAACACTGAGAGCGGCTCAGGGACACCAATGGCGTATGATACCTGCACCGCTTCTGTCAACCTTGGTTGGGTCCTTTCCTGAGAAGGCACCTCCACCAT
GAGCACCCCAACCACCATAAGTGTCAATGATGATCTTCCTCCCTGTAAGTCCAGCATCACCATGAGGCCCTCCGATGACAAAACGACCAGATGGGTTCAA
GTGAAAGATGGTGTTATCGTCAAGGTACTTAGCAGGGATAACAGGCTTGATCACATGCTCCTTCAAGTCAGCAGCAATCTCATCATTGGTGACAGTTTCG
TCATGTTGAGTTGAGATAAGAACAGTGTGGACTCTAATCGGAATCATAGCTCCACCATCGTTCTTG